Gene annotation
Transcriptome id Sobic.004G089200.1
Synonym ATH6, ATATH6, Sb04g007380
Functional annotation ABC transporter, ATP-binding protein, putative, expressed
UniProt C5XXZ9 , C6JS39
Pfam PF12698 PF00005
Panther DB PTHR19229 PTHR19229:SF127
NCBI CDD KOG0059; Lipid exporter ABCA1 and related proteins, ABC superfamily
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT3G47790 : ABC2 homolog 7
RAP-DB (Rice) LOC_Os02g11960.1 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a034585 , Zm00025a020217 , Zm00025a020220
Brachypodium KQJ94018
Barley HORVU6Hr1G038520.38 , HORVU6Hr1G038520.39 , HORVU6Hr1G038520.34 , HORVU6Hr1G038520.35 , HORVU6Hr1G038520.36 , HORVU6Hr1G038520.37 , HORVU6Hr1G038520.30 , HORVU6Hr1G038520.31 , HORVU6Hr1G038520.32 , HORVU6Hr1G038520.33 , HORVU6Hr1G038520.16 , HORVU6Hr1G038520.17 , HORVU6Hr1G038520.14 , HORVU6Hr1G038520.15 , HORVU6Hr1G038520.12 , HORVU6Hr1G038520.13 , HORVU6Hr1G038520.10 , HORVU6Hr1G038520.11 , HORVU6Hr1G038520.18 , HORVU6Hr1G038520.19 , HORVU6Hr1G038520.4 , HORVU6Hr1G038520.5 , HORVU6Hr1G038520.6 , HORVU6Hr1G038520.1 , HORVU6Hr1G038520.2 , HORVU6Hr1G038520.3 , HORVU6Hr1G038520.8 , HORVU6Hr1G038520.9 , HORVU6Hr1G038520.45 , HORVU6Hr1G038520.44 , HORVU6Hr1G038520.47 , HORVU6Hr1G038520.46 , HORVU6Hr1G038520.40 , HORVU6Hr1G038520.43 , HORVU6Hr1G038520.48 , HORVU6Hr1G038520.28 , HORVU6Hr1G038520.27 , HORVU6Hr1G038520.26 , HORVU6Hr1G038520.25 , HORVU6Hr1G038520.24 , HORVU6Hr1G038520.23 , HORVU6Hr1G038520.22 , HORVU6Hr1G038520.21 , HORVU6Hr1G038520.20
Wheat TraesCS6B02G211300 , TraesCS6A02G183200 , TraesCS6A02G183200 , TraesCS6D02G170100
Populus -


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cDNA sequences
Sobic.004G089200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G025700 lectin-like receptor kinase, putative, expressed -
2 Sobic.008G157100 "BZIP transcription factor family protein, predicted target of novel-mir-617 expressed in the stems of sweet sorghum"(PubMedID : 26117170)@down-regulated TF in developmental senescence(PubMedID : 27586543)@bZIP transcription factor domain containing protein, expressed -
3 Sobic.007G149700 TKL_IRAK_DUF26-lh.11 - DUF26 kinases have homology to DUF26 containing loci, expressed -
4 Sobic.006G025600 - -
5 Sobic.002G044700 SAM dependent carboxyl methyltransferase, putative, expressed -
6 Sobic.006G276100 protein kinase family protein, putative, expressed -
7 Sobic.010G205700 Leucine Rich Repeat family protein, expressed -
8 Sobic.004G300000 OsFtsH7 FtsH protease, homologue of AtFtsH7, expressed K03798: ftsH, cell division protease FtsH
9 Sobic.002G354600 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
10 Sobic.004G165900 SOUL heme-binding protein, putative, expressed -
11 Sobic.002G173100 Leucine Rich Repeat family protein, expressed -
12 Sobic.003G359500 expressed protein -
13 Sobic.003G190100 vacuolar-processing enzyme precursor, putative, expressed K01369: legumain
14 Sobic.006G177900 - -
15 Sobic.005G138600 - -
16 Sobic.004G252500 OsProtIV1 - Putative Protease IV homologue@ Domain 2 is a SPH, expressed K04773: protease IV
17 Sobic.003G108900 -(PubMedID : 26465154)@peptidase, putative, expressed -
18 Sobic.001G126400 - K13179: DDX18, ATP-dependent RNA helicase DDX18/HAS1
19 Sobic.001G250000 - -
20 Sobic.010G035500 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed K13628: iron-sulfur cluster assembly protein


Gene co-expression network
sample Sobic004G089200 Sobic004G089200 Sobic002G025700 Sobic002G025700 Sobic004G089200--Sobic002G025700 Sobic008G157100 Sobic008G157100 Sobic004G089200--Sobic008G157100 Sobic007G149700 Sobic007G149700 Sobic004G089200--Sobic007G149700 Sobic006G025600 Sobic006G025600 Sobic004G089200--Sobic006G025600 Sobic002G044700 Sobic002G044700 Sobic004G089200--Sobic002G044700 Sobic006G276100 Sobic006G276100 Sobic004G089200--Sobic006G276100 Sobic010G205700 Sobic010G205700 Sobic004G089200--Sobic010G205700 Sobic004G300000 Sobic004G300000 Sobic004G089200--Sobic004G300000 Sobic002G354600 Sobic002G354600 Sobic004G089200--Sobic002G354600 Sobic002G025700--Sobic004G300000 Sobic002G025700--Sobic004G089200 Sobic010G035500 Sobic010G035500 Sobic002G025700--Sobic010G035500 Sobic003G359500 Sobic003G359500 Sobic002G025700--Sobic003G359500 Sobic010G207500 Sobic010G207500 Sobic002G025700--Sobic010G207500 Sobic002G025700--Sobic002G354600 Sobic004G165900 Sobic004G165900 Sobic002G025700--Sobic004G165900 Sobic002G025700--Sobic010G205700 Sobic006G193200 Sobic006G193200 Sobic002G025700--Sobic006G193200 Sobic008G157100--Sobic004G089200 Sobic008G157100--Sobic007G149700 Sobic008G157100--Sobic002G354600 Sobic008G157100--Sobic006G025600 Sobic003G190100 Sobic003G190100 Sobic008G157100--Sobic003G190100 Sobic003G108900 Sobic003G108900 Sobic008G157100--Sobic003G108900 Sobic008G157100--Sobic002G044700 Sobic002G173100 Sobic002G173100 Sobic008G157100--Sobic002G173100 Sobic008G157100--Sobic004G165900 Sobic007G149700--Sobic004G089200 Sobic007G149700--Sobic008G157100 Sobic007G149700--Sobic006G025600 Sobic002G077400 Sobic002G077400 Sobic007G149700--Sobic002G077400 Sobic007G149700--Sobic002G044700 Sobic006G177900 Sobic006G177900 Sobic007G149700--Sobic006G177900 Sobic007G149700--Sobic003G190100 Sobic001G126400 Sobic001G126400 Sobic007G149700--Sobic001G126400 Sobic001G009000 Sobic001G009000 Sobic007G149700--Sobic001G009000 Sobic006G025600--Sobic002G044700 Sobic006G025600--Sobic004G089200 Sobic006G025600--Sobic006G276100 Sobic001G250000 Sobic001G250000 Sobic006G025600--Sobic001G250000 Sobic006G025500 Sobic006G025500 Sobic006G025600--Sobic006G025500 Sobic006G025600--Sobic006G177900 Sobic004G252500 Sobic004G252500 Sobic006G025600--Sobic004G252500 Sobic010G126200 Sobic010G126200 Sobic006G025600--Sobic010G126200 Sobic006G025600--Sobic007G149700 Sobic002G044700--Sobic006G025600 Sobic010G045100 Sobic010G045100 Sobic002G044700--Sobic010G045100 Sobic002G044700--Sobic001G250000 Sobic002G044700--Sobic006G177900 Sobic002G044700--Sobic010G126200 Sobic002G044700--Sobic006G276100 Sobic002G044700--Sobic004G089200 Sobic002G044700--Sobic007G149700 Sobic004G235750 Sobic004G235750 Sobic002G044700--Sobic004G235750 Sobic006G276100--Sobic006G025600 Sobic006G276100--Sobic002G044700 Sobic006G276100--Sobic006G177900 Sobic006G276100--Sobic004G089200 Sobic006G276100--Sobic001G250000 Sobic006G276100--Sobic004G252500 Sobic006G276100--Sobic003G108900 Sobic006G276100--Sobic002G173100 Sobic003G190000 Sobic003G190000 Sobic006G276100--Sobic003G190000 Sobic010G205700--Sobic002G025700 Sobic010G205700--Sobic004G089200 Sobic010G205700--Sobic004G300000 Sobic003G306700 Sobic003G306700 Sobic010G205700--Sobic003G306700 Sobic008G065200 Sobic008G065200 Sobic010G205700--Sobic008G065200 Sobic010G205700--Sobic002G173100 Sobic003G080800 Sobic003G080800 Sobic010G205700--Sobic003G080800 Sobic004G268500 Sobic004G268500 Sobic010G205700--Sobic004G268500 Sobic010G205700--Sobic007G149700 Sobic004G300000--Sobic010G035500 Sobic004G300000--Sobic002G025700 Sobic004G300000--Sobic006G193200 Sobic006G214700 Sobic006G214700 Sobic004G300000--Sobic006G214700 Sobic004G300000--Sobic003G108900 Sobic010G197000 Sobic010G197000 Sobic004G300000--Sobic010G197000 Sobic004G300000--Sobic004G165900 Sobic003G014300 Sobic003G014300 Sobic004G300000--Sobic003G014300 Sobic004G300000--Sobic002G354600 Sobic002G354600--Sobic010G197000 Sobic002G354600--Sobic004G300000 Sobic005G138600 Sobic005G138600 Sobic002G354600--Sobic005G138600 Sobic009G014100 Sobic009G014100 Sobic002G354600--Sobic009G014100 Sobic002G354600--Sobic002G025700 Sobic002G354600--Sobic010G035500 Sobic002G354600--Sobic003G108900 Sobic002G331800 Sobic002G331800 Sobic002G354600--Sobic002G331800 Sobic004G298900 Sobic004G298900 Sobic002G354600--Sobic004G298900
Octagon: transcription factors


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