Gene annotation
Transcriptome id Sobic.001G126400.1
Synonym Sb01g011090
Functional annotation -
UniProt A0A1B6QIP5
Pfam PF04851 PF00271
Panther DB PTHR24031 PTHR24031:SF305
NCBI CDD KOG0340; ATP-dependent RNA helicase
KEGG Orthology K13179; DDX18, ATP-dependent RNA helicase DDX18/HAS1
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G18600 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os03g58810.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a033969 , Zm00025a009133 , Zm00025a053975 , Zm00025a016542 , Zm00025a006881 , Zm00025a007714
Brachypodium KQJ89637 , KQJ92010 , PNT73958 , KQK12639
Barley HORVU4Hr1G000640.1 , HORVU4Hr1G000640.2 , HORVU4Hr1G000640.3 , HORVU5Hr1G010160.3 , HORVU5Hr1G010160.1 , HORVU5Hr1G010160.2 , HORVU2Hr1G072780.3
Wheat TraesCS5A02G114200 , TraesCS5D02G050600 , TraesCS6D02G292400 , TraesCS6A02G312900 , TraesCS6B02G342900 , TraesCS5D02G127000 , TraesCS6A02G356000 , TraesCS5B02G120400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G149700 TKL_IRAK_DUF26-lh.11 - DUF26 kinases have homology to DUF26 containing loci, expressed -
2 Sobic.004G089200 ABC transporter, ATP-binding protein, putative, expressed -
3 Sobic.002G173100 Leucine Rich Repeat family protein, expressed -
4 Sobic.008G157100 "BZIP transcription factor family protein, predicted target of novel-mir-617 expressed in the stems of sweet sorghum"(PubMedID : 26117170)@down-regulated TF in developmental senescence(PubMedID : 27586543)@bZIP transcription factor domain containing protein, expressed -
5 Sobic.002G354600 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
6 Sobic.006G025600 - -
7 Sobic.001G250000 - -
8 Sobic.002G044700 SAM dependent carboxyl methyltransferase, putative, expressed -
9 Sobic.002G077400 receptor-like protein kinase precursor, putative, expressed -
10 Sobic.006G177900 - -
11 Sobic.006G276100 protein kinase family protein, putative, expressed -
12 Sobic.004G235750 - -
13 Sobic.003G190100 vacuolar-processing enzyme precursor, putative, expressed K01369: legumain
14 Sobic.003G125900 DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed K02470: DNA gyrase subunit B
15 Sobic.003G288800 phosphoesterase, putative, expressed K08073: bifunctional polynucleotide phosphatase/kinase
16 Sobic.002G025700 lectin-like receptor kinase, putative, expressed -
17 Sobic.003G216300 pleiotropic drug resistance protein, putative, expressed -
18 Sobic.005G093800 NB-ARC domain containing protein, expressed K13457: RPM1, disease resistance protein RPM1
19 Sobic.010G205700 Leucine Rich Repeat family protein, expressed -
20 Sobic.001G009000 expressed protein -


Gene co-expression network
sample Sobic001G126400 Sobic001G126400 Sobic007G149700 Sobic007G149700 Sobic001G126400--Sobic007G149700 Sobic004G089200 Sobic004G089200 Sobic001G126400--Sobic004G089200 Sobic002G173100 Sobic002G173100 Sobic001G126400--Sobic002G173100 Sobic008G157100 Sobic008G157100 Sobic001G126400--Sobic008G157100 Sobic002G354600 Sobic002G354600 Sobic001G126400--Sobic002G354600 Sobic006G025600 Sobic006G025600 Sobic001G126400--Sobic006G025600 Sobic001G250000 Sobic001G250000 Sobic001G126400--Sobic001G250000 Sobic002G044700 Sobic002G044700 Sobic001G126400--Sobic002G044700 Sobic002G077400 Sobic002G077400 Sobic001G126400--Sobic002G077400 Sobic007G149700--Sobic004G089200 Sobic007G149700--Sobic008G157100 Sobic007G149700--Sobic006G025600 Sobic007G149700--Sobic002G077400 Sobic007G149700--Sobic002G044700 Sobic006G177900 Sobic006G177900 Sobic007G149700--Sobic006G177900 Sobic003G190100 Sobic003G190100 Sobic007G149700--Sobic003G190100 Sobic007G149700--Sobic001G126400 Sobic001G009000 Sobic001G009000 Sobic007G149700--Sobic001G009000 Sobic002G025700 Sobic002G025700 Sobic004G089200--Sobic002G025700 Sobic004G089200--Sobic008G157100 Sobic004G089200--Sobic007G149700 Sobic004G089200--Sobic006G025600 Sobic004G089200--Sobic002G044700 Sobic006G276100 Sobic006G276100 Sobic004G089200--Sobic006G276100 Sobic010G205700 Sobic010G205700 Sobic004G089200--Sobic010G205700 Sobic004G300000 Sobic004G300000 Sobic004G089200--Sobic004G300000 Sobic004G089200--Sobic002G354600 Sobic002G173100--Sobic003G190100 Sobic003G108900 Sobic003G108900 Sobic002G173100--Sobic003G108900 Sobic003G203300 Sobic003G203300 Sobic002G173100--Sobic003G203300 Sobic001G060500 Sobic001G060500 Sobic002G173100--Sobic001G060500 Sobic003G190000 Sobic003G190000 Sobic002G173100--Sobic003G190000 Sobic005G075100 Sobic005G075100 Sobic002G173100--Sobic005G075100 Sobic004G271600 Sobic004G271600 Sobic002G173100--Sobic004G271600 Sobic005G179300 Sobic005G179300 Sobic002G173100--Sobic005G179300 Sobic002G173100--Sobic004G300000 Sobic008G157100--Sobic004G089200 Sobic008G157100--Sobic007G149700 Sobic008G157100--Sobic002G354600 Sobic008G157100--Sobic006G025600 Sobic008G157100--Sobic003G190100 Sobic008G157100--Sobic003G108900 Sobic008G157100--Sobic002G044700 Sobic008G157100--Sobic002G173100 Sobic004G165900 Sobic004G165900 Sobic008G157100--Sobic004G165900 Sobic010G197000 Sobic010G197000 Sobic002G354600--Sobic010G197000 Sobic002G354600--Sobic004G300000 Sobic005G138600 Sobic005G138600 Sobic002G354600--Sobic005G138600 Sobic009G014100 Sobic009G014100 Sobic002G354600--Sobic009G014100 Sobic002G354600--Sobic002G025700 Sobic010G035500 Sobic010G035500 Sobic002G354600--Sobic010G035500 Sobic002G354600--Sobic003G108900 Sobic002G331800 Sobic002G331800 Sobic002G354600--Sobic002G331800 Sobic004G298900 Sobic004G298900 Sobic002G354600--Sobic004G298900 Sobic006G025600--Sobic002G044700 Sobic006G025600--Sobic004G089200 Sobic006G025600--Sobic006G276100 Sobic006G025600--Sobic001G250000 Sobic006G025500 Sobic006G025500 Sobic006G025600--Sobic006G025500 Sobic006G025600--Sobic006G177900 Sobic004G252500 Sobic004G252500 Sobic006G025600--Sobic004G252500 Sobic010G126200 Sobic010G126200 Sobic006G025600--Sobic010G126200 Sobic006G025600--Sobic007G149700 Sobic001G250000--Sobic006G177900 Sobic001G250000--Sobic002G044700 Sobic001G250000--Sobic006G025600 Sobic010G045100 Sobic010G045100 Sobic001G250000--Sobic010G045100 Sobic010G207100 Sobic010G207100 Sobic001G250000--Sobic010G207100 Sobic005G167000 Sobic005G167000 Sobic001G250000--Sobic005G167000 Sobic001G250000--Sobic004G252500 Sobic001G250000--Sobic006G276100 Sobic006G036300 Sobic006G036300 Sobic001G250000--Sobic006G036300 Sobic002G044700--Sobic006G025600 Sobic002G044700--Sobic010G045100 Sobic002G044700--Sobic001G250000 Sobic002G044700--Sobic006G177900 Sobic002G044700--Sobic010G126200 Sobic002G044700--Sobic006G276100 Sobic002G044700--Sobic004G089200 Sobic002G044700--Sobic007G149700 Sobic004G235750 Sobic004G235750 Sobic002G044700--Sobic004G235750 Sobic002G077400--Sobic006G177900 Sobic002G077400--Sobic001G009000 Sobic002G077400--Sobic003G190100 Sobic005G093800 Sobic005G093800 Sobic002G077400--Sobic005G093800 Sobic002G077400--Sobic007G149700 Sobic010G271901 Sobic010G271901 Sobic002G077400--Sobic010G271901 Sobic002G077400--Sobic002G173100 Sobic002G077400--Sobic001G250000 Sobic010G178401 Sobic010G178401 Sobic002G077400--Sobic010G178401
Octagon: transcription factors


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