Gene annotation
Transcriptome id Sobic.002G354600.1
Synonym Sb02g037620, Mitochodrial transcription termination
Functional annotation "Belonging to the Sdw3 locus, Sbi_sdw3" (PubMedID : 20464438)
mTERF family protein, expressed
UniProt C5XCG8
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF13
NCBI CDD -
KEGG Orthology K15032; mTERF domain-containing protein, mitochondrial
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT5G55580 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os07g39430.1 : mTERF family protein, expressed
MaizeGDB (Corn) Zm00025a015026
Brachypodium KQK15517 , KQK15516
Barley HORVU2Hr1G036490.8 , HORVU2Hr1G036490.9 , HORVU2Hr1G036490.6 , HORVU2Hr1G036490.7 , HORVU2Hr1G036490.4 , HORVU2Hr1G036490.5 , HORVU2Hr1G036490.2 , HORVU2Hr1G036490.3 , HORVU2Hr1G036490.1 , HORVU2Hr1G036490.14 , HORVU2Hr1G036490.15 , HORVU2Hr1G036490.16 , HORVU2Hr1G036490.17 , HORVU2Hr1G036490.10 , HORVU2Hr1G036490.11 , HORVU2Hr1G036490.12 , HORVU2Hr1G036490.13 , HORVU2Hr1G036490.18 , HORVU2Hr1G036490.19
Wheat TraesCS2D02G198500 , TraesCS2B02G218100 , TraesCS2A02G189200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G197000 M16 domain containing zinc peptidase, putative, expressed -
2 Sobic.004G300000 OsFtsH7 FtsH protease, homologue of AtFtsH7, expressed K03798: ftsH, cell division protease FtsH
3 Sobic.005G138600 - -
4 Sobic.009G014100 OsFBX178 - F-box domain containing protein, expressed -
5 Sobic.002G025700 lectin-like receptor kinase, putative, expressed -
6 Sobic.010G035500 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed K13628: iron-sulfur cluster assembly protein
7 Sobic.003G108900 -(PubMedID : 26465154)@peptidase, putative, expressed -
8 Sobic.002G331800 PPR repeat containing protein, expressed -
9 Sobic.004G298900 OR, putative, expressed -
10 Sobic.006G214700 APO, putative, expressed -
11 Sobic.003G014300 expressed protein -
12 Sobic.002G173100 Leucine Rich Repeat family protein, expressed -
13 Sobic.006G193200 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
14 Sobic.003G306600 acetamidase, putative, expressed K01455: formamidase
15 Sobic.003G037300 Twin LOV 1, putative, expressed -
16 Sobic.008G157100 "BZIP transcription factor family protein, predicted target of novel-mir-617 expressed in the stems of sweet sorghum"(PubMedID : 26117170)@down-regulated TF in developmental senescence(PubMedID : 27586543)@bZIP transcription factor domain containing protein, expressed -
17 Sobic.004G089200 ABC transporter, ATP-binding protein, putative, expressed -
18 Sobic.003G125900 DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed K02470: DNA gyrase subunit B
19 Sobic.010G076800 ferredoxin thioredoxin reductase catalytic beta chain family protein(PubMedID : 26465154)@ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed K17892: ferredoxin-thioredoxin reductase catalytic chain
20 Sobic.004G165900 SOUL heme-binding protein, putative, expressed -


Gene co-expression network
sample Sobic002G354600 Sobic002G354600 Sobic010G197000 Sobic010G197000 Sobic002G354600--Sobic010G197000 Sobic004G300000 Sobic004G300000 Sobic002G354600--Sobic004G300000 Sobic005G138600 Sobic005G138600 Sobic002G354600--Sobic005G138600 Sobic009G014100 Sobic009G014100 Sobic002G354600--Sobic009G014100 Sobic002G025700 Sobic002G025700 Sobic002G354600--Sobic002G025700 Sobic010G035500 Sobic010G035500 Sobic002G354600--Sobic010G035500 Sobic003G108900 Sobic003G108900 Sobic002G354600--Sobic003G108900 Sobic002G331800 Sobic002G331800 Sobic002G354600--Sobic002G331800 Sobic004G298900 Sobic004G298900 Sobic002G354600--Sobic004G298900 Sobic010G197000--Sobic009G014100 Sobic010G197000--Sobic002G354600 Sobic010G197000--Sobic005G138600 Sobic010G197000--Sobic004G300000 Sobic010G109600 Sobic010G109600 Sobic010G197000--Sobic010G109600 Sobic003G190000 Sobic003G190000 Sobic010G197000--Sobic003G190000 Sobic010G197000--Sobic002G331800 Sobic006G214700 Sobic006G214700 Sobic010G197000--Sobic006G214700 Sobic008G172300 Sobic008G172300 Sobic010G197000--Sobic008G172300 Sobic004G300000--Sobic010G035500 Sobic004G300000--Sobic002G025700 Sobic006G193200 Sobic006G193200 Sobic004G300000--Sobic006G193200 Sobic004G300000--Sobic006G214700 Sobic004G300000--Sobic003G108900 Sobic004G300000--Sobic010G197000 Sobic004G165900 Sobic004G165900 Sobic004G300000--Sobic004G165900 Sobic003G014300 Sobic003G014300 Sobic004G300000--Sobic003G014300 Sobic004G300000--Sobic002G354600 Sobic005G138600--Sobic010G197000 Sobic005G138600--Sobic002G331800 Sobic005G138600--Sobic002G354600 Sobic003G439600 Sobic003G439600 Sobic005G138600--Sobic003G439600 Sobic010G211500 Sobic010G211500 Sobic005G138600--Sobic010G211500 Sobic009G052700 Sobic009G052700 Sobic005G138600--Sobic009G052700 Sobic005G138600--Sobic006G214700 Sobic003G245800 Sobic003G245800 Sobic005G138600--Sobic003G245800 Sobic001G071200 Sobic001G071200 Sobic005G138600--Sobic001G071200 Sobic009G014100--Sobic010G197000 Sobic009G014100--Sobic008G172300 Sobic002G073200 Sobic002G073200 Sobic009G014100--Sobic002G073200 Sobic009G014100--Sobic003G108900 Sobic004G026500 Sobic004G026500 Sobic009G014100--Sobic004G026500 Sobic009G014100--Sobic002G354600 Sobic004G333400 Sobic004G333400 Sobic009G014100--Sobic004G333400 Sobic009G014100--Sobic003G190000 Sobic002G168300 Sobic002G168300 Sobic009G014100--Sobic002G168300 Sobic002G025700--Sobic004G300000 Sobic004G089200 Sobic004G089200 Sobic002G025700--Sobic004G089200 Sobic002G025700--Sobic010G035500 Sobic003G359500 Sobic003G359500 Sobic002G025700--Sobic003G359500 Sobic010G207500 Sobic010G207500 Sobic002G025700--Sobic010G207500 Sobic002G025700--Sobic002G354600 Sobic002G025700--Sobic004G165900 Sobic010G205700 Sobic010G205700 Sobic002G025700--Sobic010G205700 Sobic002G025700--Sobic006G193200 Sobic010G035500--Sobic004G300000 Sobic001G029200 Sobic001G029200 Sobic010G035500--Sobic001G029200 Sobic010G035500--Sobic006G214700 Sobic010G035500--Sobic002G025700 Sobic006G201100 Sobic006G201100 Sobic010G035500--Sobic006G201100 Sobic009G141400 Sobic009G141400 Sobic010G035500--Sobic009G141400 Sobic009G019100 Sobic009G019100 Sobic010G035500--Sobic009G019100 Sobic008G081900 Sobic008G081900 Sobic010G035500--Sobic008G081900 Sobic010G035500--Sobic006G193200 Sobic003G108900--Sobic004G165900 Sobic004G252500 Sobic004G252500 Sobic003G108900--Sobic004G252500 Sobic004G300100 Sobic004G300100 Sobic003G108900--Sobic004G300100 Sobic010G231500 Sobic010G231500 Sobic003G108900--Sobic010G231500 Sobic002G173100 Sobic002G173100 Sobic003G108900--Sobic002G173100 Sobic003G108900--Sobic004G300000 Sobic003G108900--Sobic009G014100 Sobic004G271600 Sobic004G271600 Sobic003G108900--Sobic004G271600 Sobic004G207400 Sobic004G207400 Sobic003G108900--Sobic004G207400 Sobic010G076800 Sobic010G076800 Sobic002G331800--Sobic010G076800 Sobic002G331800--Sobic006G214700 Sobic002G331800--Sobic003G439600 Sobic002G331800--Sobic004G333400 Sobic010G183400 Sobic010G183400 Sobic002G331800--Sobic010G183400 Sobic001G118400 Sobic001G118400 Sobic002G331800--Sobic001G118400 Sobic001G450600 Sobic001G450600 Sobic002G331800--Sobic001G450600 Sobic003G125900 Sobic003G125900 Sobic002G331800--Sobic003G125900 Sobic002G331800--Sobic003G245800 Sobic003G037300 Sobic003G037300 Sobic004G298900--Sobic003G037300 Sobic009G062400 Sobic009G062400 Sobic004G298900--Sobic009G062400 Sobic006G258700 Sobic006G258700 Sobic004G298900--Sobic006G258700 Sobic008G006100 Sobic008G006100 Sobic004G298900--Sobic008G006100 Sobic004G298900--Sobic003G014300 Sobic002G102200 Sobic002G102200 Sobic004G298900--Sobic002G102200 Sobic005G111550 Sobic005G111550 Sobic004G298900--Sobic005G111550 Sobic004G151500 Sobic004G151500 Sobic004G298900--Sobic004G151500 Sobic006G260800 Sobic006G260800 Sobic004G298900--Sobic006G260800
Octagon: transcription factors


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