Gene annotation
Transcriptome id Sobic.003G190100.1
Synonym GAMMAVPE, GAMMA-VPE, Sb03g025440
Functional annotation vacuolar-processing enzyme precursor, putative, expressed
UniProt C5XNM6
Pfam PF01650
Panther DB PTHR12000 PTHR12000:SF15
NCBI CDD -
KEGG Orthology K01369; legumain
Gene Ontology GO:0008233; peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT4G32940 : gamma vacuolar processing enzyme
RAP-DB (Rice) LOC_Os01g37910.1 : vacuolar-processing enzyme precursor, putative, expressed
MaizeGDB (Corn) Zm00025a028753 , Zm00025a038356
Brachypodium KQK08339
Barley HORVU3Hr1G048520.10 , HORVU3Hr1G048520.11 , HORVU3Hr1G048520.12 , HORVU3Hr1G048520.2 , HORVU3Hr1G048520.3 , HORVU3Hr1G048520.1 , HORVU3Hr1G048520.6 , HORVU3Hr1G048520.7 , HORVU3Hr1G048520.4 , HORVU3Hr1G048520.5 , HORVU3Hr1G048520.8 , HORVU3Hr1G048520.9
Wheat TraesCS5A02G228900 , TraesCS3D02G207600 , TraesCS5B02G227600 , TraesCS3A02G204500 , TraesCS3D02G534100 , TraesCS3B02G597800 , TraesCS3B02G597800 , TraesCS3B02G233000 , TraesCS3B02G233000 , TraesCS2D02G383500 , TraesCS5D02G238800
Populus PNS92903 , PNS92902


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cDNA sequences
Sobic.003G190100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G173100 Leucine Rich Repeat family protein, expressed -
2 Sobic.005G093800 NB-ARC domain containing protein, expressed K13457: RPM1, disease resistance protein RPM1
3 Sobic.002G077400 receptor-like protein kinase precursor, putative, expressed -
4 Sobic.002G244200 nucleolar GTP-binding protein 1, putative, expressed -
5 Sobic.004G271600 region found in RelA/SpoT proteins containing protein, expressed -
6 Sobic.007G185300 - -
7 Sobic.007G133000 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
8 Sobic.006G177900 - -
9 Sobic.005G179300 ABC transporter, ATP-binding protein, putative, expressed -
10 Sobic.003G108900 -(PubMedID : 26465154)@peptidase, putative, expressed -
11 Sobic.008G166550 - -
12 Sobic.001G413000 ABC transporter family protein, putative, expressed -
13 Sobic.004G089200 ABC transporter, ATP-binding protein, putative, expressed -
14 Sobic.003G080700 Ser/Thr protein kinase, putative, expressed -
15 Sobic.004G165900 SOUL heme-binding protein, putative, expressed -
16 Sobic.008G157100 "BZIP transcription factor family protein, predicted target of novel-mir-617 expressed in the stems of sweet sorghum"(PubMedID : 26117170)@down-regulated TF in developmental senescence(PubMedID : 27586543)@bZIP transcription factor domain containing protein, expressed -
17 Sobic.008G081900 ATP-dependent Clp protease ATP-binding subunit clpA homolog,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
18 Sobic.001G368600 NAD dependent epimerase/dehydratase family protein, putative, expressed -
19 Sobic.007G149700 TKL_IRAK_DUF26-lh.11 - DUF26 kinases have homology to DUF26 containing loci, expressed -
20 Sobic.006G243800 OsWAK55 - OsWAK receptor-like protein kinase, expressed -


Gene co-expression network
sample Sobic003G190100 Sobic003G190100 Sobic002G173100 Sobic002G173100 Sobic003G190100--Sobic002G173100 Sobic005G093800 Sobic005G093800 Sobic003G190100--Sobic005G093800 Sobic002G077400 Sobic002G077400 Sobic003G190100--Sobic002G077400 Sobic002G244200 Sobic002G244200 Sobic003G190100--Sobic002G244200 Sobic004G271600 Sobic004G271600 Sobic003G190100--Sobic004G271600 Sobic007G185300 Sobic007G185300 Sobic003G190100--Sobic007G185300 Sobic007G133000 Sobic007G133000 Sobic003G190100--Sobic007G133000 Sobic006G177900 Sobic006G177900 Sobic003G190100--Sobic006G177900 Sobic005G179300 Sobic005G179300 Sobic003G190100--Sobic005G179300 Sobic002G173100--Sobic003G190100 Sobic003G108900 Sobic003G108900 Sobic002G173100--Sobic003G108900 Sobic003G203300 Sobic003G203300 Sobic002G173100--Sobic003G203300 Sobic001G060500 Sobic001G060500 Sobic002G173100--Sobic001G060500 Sobic003G190000 Sobic003G190000 Sobic002G173100--Sobic003G190000 Sobic005G075100 Sobic005G075100 Sobic002G173100--Sobic005G075100 Sobic002G173100--Sobic004G271600 Sobic002G173100--Sobic005G179300 Sobic004G300000 Sobic004G300000 Sobic002G173100--Sobic004G300000 Sobic005G093800--Sobic003G190100 Sobic005G093800--Sobic006G177900 Sobic005G093800--Sobic004G271600 Sobic005G093800--Sobic002G173100 Sobic005G093800--Sobic002G077400 Sobic010G121200 Sobic010G121200 Sobic005G093800--Sobic010G121200 Sobic002G115050 Sobic002G115050 Sobic005G093800--Sobic002G115050 Sobic008G166550 Sobic008G166550 Sobic005G093800--Sobic008G166550 Sobic001G492600 Sobic001G492600 Sobic005G093800--Sobic001G492600 Sobic002G077400--Sobic006G177900 Sobic001G009000 Sobic001G009000 Sobic002G077400--Sobic001G009000 Sobic002G077400--Sobic003G190100 Sobic002G077400--Sobic005G093800 Sobic007G149700 Sobic007G149700 Sobic002G077400--Sobic007G149700 Sobic010G271901 Sobic010G271901 Sobic002G077400--Sobic010G271901 Sobic002G077400--Sobic002G173100 Sobic001G250000 Sobic001G250000 Sobic002G077400--Sobic001G250000 Sobic010G178401 Sobic010G178401 Sobic002G077400--Sobic010G178401 Sobic009G248801 Sobic009G248801 Sobic002G244200--Sobic009G248801 Sobic005G095000 Sobic005G095000 Sobic002G244200--Sobic005G095000 Sobic002G244200--Sobic008G166550 Sobic007G090403 Sobic007G090403 Sobic002G244200--Sobic007G090403 Sobic002G244200--Sobic007G133000 Sobic003G160100 Sobic003G160100 Sobic002G244200--Sobic003G160100 Sobic004G086150 Sobic004G086150 Sobic002G244200--Sobic004G086150 Sobic007G202300 Sobic007G202300 Sobic002G244200--Sobic007G202300 Sobic003G416000 Sobic003G416000 Sobic002G244200--Sobic003G416000 Sobic002G132400 Sobic002G132400 Sobic004G271600--Sobic002G132400 Sobic002G081400 Sobic002G081400 Sobic004G271600--Sobic002G081400 Sobic010G100900 Sobic010G100900 Sobic004G271600--Sobic010G100900 Sobic002G351200 Sobic002G351200 Sobic004G271600--Sobic002G351200 Sobic007G124500 Sobic007G124500 Sobic004G271600--Sobic007G124500 Sobic002G072500 Sobic002G072500 Sobic004G271600--Sobic002G072500 Sobic006G090100 Sobic006G090100 Sobic004G271600--Sobic006G090100 Sobic001G509200 Sobic001G509200 Sobic004G271600--Sobic001G509200 Sobic002G060800 Sobic002G060800 Sobic004G271600--Sobic002G060800 Sobic003G179350 Sobic003G179350 Sobic007G185300--Sobic003G179350 Sobic007G185300--Sobic002G173100 Sobic007G185300--Sobic003G190100 Sobic003G306600 Sobic003G306600 Sobic007G185300--Sobic003G306600 Sobic007G185300--Sobic002G244200 Sobic008G081900 Sobic008G081900 Sobic007G185300--Sobic008G081900 Sobic007G185300--Sobic007G090403 Sobic005G133600 Sobic005G133600 Sobic007G185300--Sobic005G133600 Sobic002G424700 Sobic002G424700 Sobic007G185300--Sobic002G424700 Sobic010G231300 Sobic010G231300 Sobic007G133000--Sobic010G231300 Sobic001G217900 Sobic001G217900 Sobic007G133000--Sobic001G217900 Sobic001G263100 Sobic001G263100 Sobic007G133000--Sobic001G263100 Sobic010G125833 Sobic010G125833 Sobic007G133000--Sobic010G125833 Sobic005G068700 Sobic005G068700 Sobic007G133000--Sobic005G068700 Sobic001G540600 Sobic001G540600 Sobic007G133000--Sobic001G540600 Sobic002G206300 Sobic002G206300 Sobic007G133000--Sobic002G206300 Sobic001G180200 Sobic001G180200 Sobic007G133000--Sobic001G180200 Sobic006G235400 Sobic006G235400 Sobic007G133000--Sobic006G235400 Sobic006G177900--Sobic001G250000 Sobic002G044700 Sobic002G044700 Sobic006G177900--Sobic002G044700 Sobic006G177900--Sobic002G077400 Sobic006G177900--Sobic005G093800 Sobic006G025600 Sobic006G025600 Sobic006G177900--Sobic006G025600 Sobic004G252500 Sobic004G252500 Sobic006G177900--Sobic004G252500 Sobic006G276100 Sobic006G276100 Sobic006G177900--Sobic006G276100 Sobic006G177900--Sobic003G190100 Sobic004G165900 Sobic004G165900 Sobic006G177900--Sobic004G165900 Sobic005G179300--Sobic006G090100 Sobic001G077300 Sobic001G077300 Sobic005G179300--Sobic001G077300 Sobic003G073800 Sobic003G073800 Sobic005G179300--Sobic003G073800 Sobic006G212800 Sobic006G212800 Sobic005G179300--Sobic006G212800 Sobic009G207900 Sobic009G207900 Sobic005G179300--Sobic009G207900 Sobic001G207800 Sobic001G207800 Sobic005G179300--Sobic001G207800 Sobic009G219100 Sobic009G219100 Sobic005G179300--Sobic009G219100 Sobic005G179300--Sobic004G271600 Sobic005G179300--Sobic002G081400
Octagon: transcription factors


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