Gene annotation
Transcriptome id Sobic.008G078900.1
Synonym Sb08g007270
Functional annotation NADP-dependent oxidoreductase, putative, expressed
UniProt C5YTT7
Pfam PF00107 PF16884
Panther DB PTHR11695 PTHR11695:SF569
NCBI CDD -
KEGG Orthology K07119; PTGR3, prostaglandin reductase 3
Gene Ontology GO:0016491; oxidoreductase activity GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G37980 : Zinc-binding dehydrogenase family protein
RAP-DB (Rice) LOC_Os12g12580.1 : NADP-dependent oxidoreductase, putative, expressed
MaizeGDB (Corn) Zm00025a054479
Brachypodium PNT65294
Barley HORVU2Hr1G010250.1 , HORVU2Hr1G010250.2
Wheat TraesCS5B02G303700 , TraesCS5D02G310600 , TraesCS5D02G103800 , TraesCS5D02G310500 , TraesCS2A02G069900 , TraesCS5A02G091700 , TraesCS5A02G303300 , TraesCS2A02G070000 , TraesCS5B02G303800
Populus -


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cDNA sequences
Sobic.008G078900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -
2 Sobic.002G114700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.003G114100 expressed protein -
4 Sobic.003G170200 OsClp2 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
5 Sobic.005G111500 FHA domain containing protein, putative, expressed -
6 Sobic.001G037500 expressed protein -
7 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
8 Sobic.007G205600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00434: L-ascorbate peroxidase
9 Sobic.008G063200 expressed protein -
10 Sobic.002G296900 MOSC domain-containing protein, mitochondrial precursor, putative, expressed -
11 Sobic.007G076900 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
12 Sobic.001G186200 pentatricopeptide, putative, expressed -
13 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
14 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
15 Sobic.003G110700 nuclear transport factor, putative, expressed -
16 Sobic.010G189200 pentatricopeptide, putative, expressed -
17 Sobic.007G085800 cycloartenol synthase, putative, expressed K19011: achilleol B synthase
18 Sobic.004G206200 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
19 Sobic.009G015300 ATCHX20, putative, expressed -
20 Sobic.010G076800 ferredoxin thioredoxin reductase catalytic beta chain family protein(PubMedID : 26465154)@ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed K17892: ferredoxin-thioredoxin reductase catalytic chain


Gene co-expression network
sample Sobic008G078900 Sobic008G078900 Sobic006G273400 Sobic006G273400 Sobic008G078900--Sobic006G273400 Sobic002G114700 Sobic002G114700 Sobic008G078900--Sobic002G114700 Sobic003G114100 Sobic003G114100 Sobic008G078900--Sobic003G114100 Sobic003G170200 Sobic003G170200 Sobic008G078900--Sobic003G170200 Sobic005G111500 Sobic005G111500 Sobic008G078900--Sobic005G111500 Sobic001G037500 Sobic001G037500 Sobic008G078900--Sobic001G037500 Sobic003G084500 Sobic003G084500 Sobic008G078900--Sobic003G084500 Sobic007G205600 Sobic007G205600 Sobic008G078900--Sobic007G205600 Sobic008G063200 Sobic008G063200 Sobic008G078900--Sobic008G063200 Sobic006G273400--Sobic001G037500 Sobic001G054100 Sobic001G054100 Sobic006G273400--Sobic001G054100 Sobic004G206200 Sobic004G206200 Sobic006G273400--Sobic004G206200 Sobic001G099000 Sobic001G099000 Sobic006G273400--Sobic001G099000 Sobic002G081500 Sobic002G081500 Sobic006G273400--Sobic002G081500 Sobic006G273400--Sobic003G084500 Sobic002G297400 Sobic002G297400 Sobic006G273400--Sobic002G297400 Sobic004G179200 Sobic004G179200 Sobic006G273400--Sobic004G179200 Sobic006G273400--Sobic008G078900 Sobic002G114700--Sobic008G078900 Sobic002G114700--Sobic003G114100 Sobic002G114700--Sobic006G273400 Sobic001G076200 Sobic001G076200 Sobic002G114700--Sobic001G076200 Sobic003G110700 Sobic003G110700 Sobic002G114700--Sobic003G110700 Sobic007G069400 Sobic007G069400 Sobic002G114700--Sobic007G069400 Sobic006G214400 Sobic006G214400 Sobic002G114700--Sobic006G214400 Sobic004G035000 Sobic004G035000 Sobic002G114700--Sobic004G035000 Sobic002G114700--Sobic007G205600 Sobic003G114100--Sobic002G114700 Sobic003G114100--Sobic001G076200 Sobic003G114100--Sobic008G078900 Sobic010G052500 Sobic010G052500 Sobic003G114100--Sobic010G052500 Sobic003G014000 Sobic003G014000 Sobic003G114100--Sobic003G014000 Sobic007G201400 Sobic007G201400 Sobic003G114100--Sobic007G201400 Sobic008G131700 Sobic008G131700 Sobic003G114100--Sobic008G131700 Sobic003G114100--Sobic006G273400 Sobic001G514100 Sobic001G514100 Sobic003G114100--Sobic001G514100 Sobic001G102500 Sobic001G102500 Sobic003G170200--Sobic001G102500 Sobic003G170200--Sobic007G205600 Sobic003G170200--Sobic008G078900 Sobic003G162800 Sobic003G162800 Sobic003G170200--Sobic003G162800 Sobic003G286300 Sobic003G286300 Sobic003G170200--Sobic003G286300 Sobic003G170200--Sobic001G514100 Sobic001G375000 Sobic001G375000 Sobic003G170200--Sobic001G375000 Sobic001G450600 Sobic001G450600 Sobic003G170200--Sobic001G450600 Sobic003G128400 Sobic003G128400 Sobic003G170200--Sobic003G128400 Sobic010G076800 Sobic010G076800 Sobic005G111500--Sobic010G076800 Sobic008G183200 Sobic008G183200 Sobic005G111500--Sobic008G183200 Sobic009G062500 Sobic009G062500 Sobic005G111500--Sobic009G062500 Sobic005G111500--Sobic008G063200 Sobic002G102200 Sobic002G102200 Sobic005G111500--Sobic002G102200 Sobic007G076900 Sobic007G076900 Sobic005G111500--Sobic007G076900 Sobic001G186200 Sobic001G186200 Sobic005G111500--Sobic001G186200 Sobic001G006000 Sobic001G006000 Sobic005G111500--Sobic001G006000 Sobic003G037300 Sobic003G037300 Sobic005G111500--Sobic003G037300 Sobic002G042500 Sobic002G042500 Sobic001G037500--Sobic002G042500 Sobic001G037500--Sobic001G054100 Sobic001G037500--Sobic006G273400 Sobic003G150800 Sobic003G150800 Sobic001G037500--Sobic003G150800 Sobic005G111550 Sobic005G111550 Sobic001G037500--Sobic005G111550 Sobic001G037500--Sobic004G206200 Sobic001G037500--Sobic002G081500 Sobic003G372900 Sobic003G372900 Sobic001G037500--Sobic003G372900 Sobic002G296100 Sobic002G296100 Sobic001G037500--Sobic002G296100 Sobic004G333400 Sobic004G333400 Sobic003G084500--Sobic004G333400 Sobic003G334100 Sobic003G334100 Sobic003G084500--Sobic003G334100 Sobic003G084500--Sobic001G450600 Sobic009G234200 Sobic009G234200 Sobic003G084500--Sobic009G234200 Sobic003G084500--Sobic003G286300 Sobic003G444500 Sobic003G444500 Sobic003G084500--Sobic003G444500 Sobic010G183400 Sobic010G183400 Sobic003G084500--Sobic010G183400 Sobic002G131700 Sobic002G131700 Sobic003G084500--Sobic002G131700 Sobic003G084500--Sobic001G054100 Sobic001G388400 Sobic001G388400 Sobic007G205600--Sobic001G388400 Sobic007G205600--Sobic003G170200 Sobic001G537700 Sobic001G537700 Sobic007G205600--Sobic001G537700 Sobic010G258300 Sobic010G258300 Sobic007G205600--Sobic010G258300 Sobic006G220600 Sobic006G220600 Sobic007G205600--Sobic006G220600 Sobic003G222600 Sobic003G222600 Sobic007G205600--Sobic003G222600 Sobic010G211500 Sobic010G211500 Sobic007G205600--Sobic010G211500 Sobic007G205600--Sobic001G450600 Sobic001G031300 Sobic001G031300 Sobic007G205600--Sobic001G031300 Sobic008G063200--Sobic001G450600 Sobic006G110900 Sobic006G110900 Sobic008G063200--Sobic006G110900 Sobic006G214700 Sobic006G214700 Sobic008G063200--Sobic006G214700 Sobic008G063200--Sobic001G006000 Sobic008G063200--Sobic002G102200 Sobic003G253300 Sobic003G253300 Sobic008G063200--Sobic003G253300 Sobic008G063200--Sobic010G076800 Sobic008G063200--Sobic004G333400 Sobic003G342200 Sobic003G342200 Sobic008G063200--Sobic003G342200
Octagon: transcription factors


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