Gene annotation
Transcriptome id Sobic.003G114100.1
Synonym Sb03g009600
Functional annotation expressed protein
UniProt C5XFS6
Pfam -
Panther DB PTHR36774 PTHR36774:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G01935 : -
RAP-DB (Rice) LOC_Os01g14890.1 : expressed protein
MaizeGDB (Corn) Zm00025a023932
Brachypodium -
Barley HORVU3Hr1G034640.1 , HORVU3Hr1G034640.3 , HORVU3Hr1G034640.4 , HORVU3Hr1G034640.5 , HORVU3Hr1G034640.6 , HORVU3Hr1G034640.7 , HORVU3Hr1G034640.8 , HORVU3Hr1G034640.9
Wheat TraesCS3D02G178000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G114100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G114700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.001G076200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf44, putative, expressed K07399: resB, cytochrome c biogenesis protein
3 Sobic.008G078900 NADP-dependent oxidoreductase, putative, expressed K07119: PTGR3, prostaglandin reductase 3
4 Sobic.010G052500 ZOS6-01 - C2H2 zinc finger protein, expressed -
5 Sobic.003G014000 peptidase C45, acyl-coenzyme A/6-aminopenicillanic acid acyl-transferase, putative, expressed -
6 Sobic.007G201400 pentatricopeptide, putative, expressed -
7 Sobic.008G131700 PsbP, putative, expressed -
8 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -
9 Sobic.001G514100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.009G136900 peptide transporter PTR2, putative, expressed -
11 Sobic.003G110700 nuclear transport factor, putative, expressed -
12 Sobic.001G460200 PPR repeat domain containing protein, putative, expressed -
13 Sobic.002G215000 chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
14 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
15 Sobic.008G101500 powdery mildew resistance protein PM3b, putative, expressed -
16 Sobic.001G489800 HNH endonuclease domain-containing protein, putative, expressed -
17 Sobic.005G127000 Upregulated in cold susceptible sorghum under stress(PubMedID : 26645959)@cytochrome P450, putative, expressed -
18 Sobic.003G439000 rubredoxin family protein, putative, expressed -
19 Sobic.003G170200 OsClp2 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
20 Sobic.004G246800 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic003G114100 Sobic003G114100 Sobic002G114700 Sobic002G114700 Sobic003G114100--Sobic002G114700 Sobic001G076200 Sobic001G076200 Sobic003G114100--Sobic001G076200 Sobic008G078900 Sobic008G078900 Sobic003G114100--Sobic008G078900 Sobic010G052500 Sobic010G052500 Sobic003G114100--Sobic010G052500 Sobic003G014000 Sobic003G014000 Sobic003G114100--Sobic003G014000 Sobic007G201400 Sobic007G201400 Sobic003G114100--Sobic007G201400 Sobic008G131700 Sobic008G131700 Sobic003G114100--Sobic008G131700 Sobic006G273400 Sobic006G273400 Sobic003G114100--Sobic006G273400 Sobic001G514100 Sobic001G514100 Sobic003G114100--Sobic001G514100 Sobic002G114700--Sobic008G078900 Sobic002G114700--Sobic003G114100 Sobic002G114700--Sobic006G273400 Sobic002G114700--Sobic001G076200 Sobic003G110700 Sobic003G110700 Sobic002G114700--Sobic003G110700 Sobic007G069400 Sobic007G069400 Sobic002G114700--Sobic007G069400 Sobic006G214400 Sobic006G214400 Sobic002G114700--Sobic006G214400 Sobic004G035000 Sobic004G035000 Sobic002G114700--Sobic004G035000 Sobic007G205600 Sobic007G205600 Sobic002G114700--Sobic007G205600 Sobic004G246800 Sobic004G246800 Sobic001G076200--Sobic004G246800 Sobic003G030400 Sobic003G030400 Sobic001G076200--Sobic003G030400 Sobic001G537700 Sobic001G537700 Sobic001G076200--Sobic001G537700 Sobic001G076200--Sobic003G114100 Sobic009G233800 Sobic009G233800 Sobic001G076200--Sobic009G233800 Sobic004G249500 Sobic004G249500 Sobic001G076200--Sobic004G249500 Sobic008G021700 Sobic008G021700 Sobic001G076200--Sobic008G021700 Sobic001G076200--Sobic002G114700 Sobic004G055600 Sobic004G055600 Sobic001G076200--Sobic004G055600 Sobic008G078900--Sobic006G273400 Sobic008G078900--Sobic002G114700 Sobic008G078900--Sobic003G114100 Sobic003G170200 Sobic003G170200 Sobic008G078900--Sobic003G170200 Sobic005G111500 Sobic005G111500 Sobic008G078900--Sobic005G111500 Sobic001G037500 Sobic001G037500 Sobic008G078900--Sobic001G037500 Sobic003G084500 Sobic003G084500 Sobic008G078900--Sobic003G084500 Sobic008G078900--Sobic007G205600 Sobic008G063200 Sobic008G063200 Sobic008G078900--Sobic008G063200 Sobic003G222300 Sobic003G222300 Sobic010G052500--Sobic003G222300 Sobic010G052500--Sobic003G114100 Sobic006G273000 Sobic006G273000 Sobic010G052500--Sobic006G273000 Sobic009G213400 Sobic009G213400 Sobic010G052500--Sobic009G213400 Sobic001G005500 Sobic001G005500 Sobic010G052500--Sobic001G005500 Sobic010G246600 Sobic010G246600 Sobic010G052500--Sobic010G246600 Sobic001G275200 Sobic001G275200 Sobic010G052500--Sobic001G275200 Sobic007G191900 Sobic007G191900 Sobic010G052500--Sobic007G191900 Sobic010G245100 Sobic010G245100 Sobic010G052500--Sobic010G245100 Sobic003G439000 Sobic003G439000 Sobic003G014000--Sobic003G439000 Sobic003G014000--Sobic003G114100 Sobic002G297400 Sobic002G297400 Sobic003G014000--Sobic002G297400 Sobic002G251400 Sobic002G251400 Sobic003G014000--Sobic002G251400 Sobic004G179200 Sobic004G179200 Sobic003G014000--Sobic004G179200 Sobic006G248200 Sobic006G248200 Sobic003G014000--Sobic006G248200 Sobic001G489800 Sobic001G489800 Sobic003G014000--Sobic001G489800 Sobic001G240000 Sobic001G240000 Sobic003G014000--Sobic001G240000 Sobic001G099000 Sobic001G099000 Sobic003G014000--Sobic001G099000 Sobic003G074700 Sobic003G074700 Sobic007G201400--Sobic003G074700 Sobic001G495300 Sobic001G495300 Sobic007G201400--Sobic001G495300 Sobic001G142400 Sobic001G142400 Sobic007G201400--Sobic001G142400 Sobic007G201400--Sobic003G114100 Sobic007G201400--Sobic008G131700 Sobic005G084000 Sobic005G084000 Sobic007G201400--Sobic005G084000 Sobic005G022800 Sobic005G022800 Sobic007G201400--Sobic005G022800 Sobic007G210600 Sobic007G210600 Sobic007G201400--Sobic007G210600 Sobic007G201400--Sobic001G099000 Sobic008G131700--Sobic003G074700 Sobic002G215000 Sobic002G215000 Sobic008G131700--Sobic002G215000 Sobic008G131700--Sobic005G084000 Sobic008G131700--Sobic001G495300 Sobic003G305300 Sobic003G305300 Sobic008G131700--Sobic003G305300 Sobic008G131700--Sobic004G246800 Sobic008G131700--Sobic007G210600 Sobic006G060200 Sobic006G060200 Sobic008G131700--Sobic006G060200 Sobic002G209600 Sobic002G209600 Sobic008G131700--Sobic002G209600 Sobic006G273400--Sobic001G037500 Sobic001G054100 Sobic001G054100 Sobic006G273400--Sobic001G054100 Sobic004G206200 Sobic004G206200 Sobic006G273400--Sobic004G206200 Sobic006G273400--Sobic001G099000 Sobic002G081500 Sobic002G081500 Sobic006G273400--Sobic002G081500 Sobic006G273400--Sobic003G084500 Sobic006G273400--Sobic002G297400 Sobic006G273400--Sobic004G179200 Sobic006G273400--Sobic008G078900 Sobic003G162800 Sobic003G162800 Sobic001G514100--Sobic003G162800 Sobic001G281500 Sobic001G281500 Sobic001G514100--Sobic001G281500 Sobic003G327200 Sobic003G327200 Sobic001G514100--Sobic003G327200 Sobic005G197300 Sobic005G197300 Sobic001G514100--Sobic005G197300 Sobic001G375000 Sobic001G375000 Sobic001G514100--Sobic001G375000 Sobic003G128400 Sobic003G128400 Sobic001G514100--Sobic003G128400 Sobic001G494500 Sobic001G494500 Sobic001G514100--Sobic001G494500 Sobic001G514100--Sobic002G297400 Sobic001G382800 Sobic001G382800 Sobic001G514100--Sobic001G382800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.