Gene annotation
Transcriptome id Sobic.007G201400.1
Synonym DOT4, Sb07g026890
Functional annotation pentatricopeptide, putative, expressed
UniProt C5YI98
Pfam PF14432 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF105
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G18750 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g10800.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a005172
Brachypodium KQK03233
Barley -
Wheat TraesCS3D02G137800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G074700 thylakoid lumenal protein, putative, expressed -
2 Sobic.001G495300 expressed protein -
3 Sobic.001G142400 RIO1 family protein, expressed -
4 Sobic.003G114100 expressed protein -
5 Sobic.008G131700 PsbP, putative, expressed -
6 Sobic.005G084000 expressed protein -
7 Sobic.005G022800 GTP binding protein, putative, expressed -
8 Sobic.007G210600 ABC transporter, ATP-binding protein, putative, expressed -
9 Sobic.001G099000 expressed protein -
10 Sobic.005G197300 GTP-binding protein, putative, expressed K03977: engA, GTPase
11 Sobic.001G514100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
12 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
13 Sobic.004G263200 uncharacterized protein At1g26090, chloroplast precursor, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
14 Sobic.004G246800 pentatricopeptide, putative, expressed -
15 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
16 Sobic.006G166000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
17 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
18 Sobic.004G208600 glycine-rich protein, putative, expressed -
19 Sobic.010G153600 pentatricopeptide, putative, expressed -
20 Sobic.002G109000 tetratricopeptide repeat containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G201400 Sobic007G201400 Sobic003G074700 Sobic003G074700 Sobic007G201400--Sobic003G074700 Sobic001G495300 Sobic001G495300 Sobic007G201400--Sobic001G495300 Sobic001G142400 Sobic001G142400 Sobic007G201400--Sobic001G142400 Sobic003G114100 Sobic003G114100 Sobic007G201400--Sobic003G114100 Sobic008G131700 Sobic008G131700 Sobic007G201400--Sobic008G131700 Sobic005G084000 Sobic005G084000 Sobic007G201400--Sobic005G084000 Sobic005G022800 Sobic005G022800 Sobic007G201400--Sobic005G022800 Sobic007G210600 Sobic007G210600 Sobic007G201400--Sobic007G210600 Sobic001G099000 Sobic001G099000 Sobic007G201400--Sobic001G099000 Sobic003G074700--Sobic008G131700 Sobic002G215000 Sobic002G215000 Sobic003G074700--Sobic002G215000 Sobic003G074700--Sobic001G495300 Sobic003G074700--Sobic007G210600 Sobic003G074700--Sobic007G201400 Sobic003G074700--Sobic005G084000 Sobic004G068300 Sobic004G068300 Sobic003G074700--Sobic004G068300 Sobic003G305300 Sobic003G305300 Sobic003G074700--Sobic003G305300 Sobic003G030900 Sobic003G030900 Sobic003G074700--Sobic003G030900 Sobic001G495300--Sobic007G210600 Sobic001G495300--Sobic003G074700 Sobic001G495300--Sobic005G084000 Sobic003G137100 Sobic003G137100 Sobic001G495300--Sobic003G137100 Sobic001G041800 Sobic001G041800 Sobic001G495300--Sobic001G041800 Sobic002G109000 Sobic002G109000 Sobic001G495300--Sobic002G109000 Sobic001G495300--Sobic001G099000 Sobic001G495300--Sobic008G131700 Sobic001G495300--Sobic007G201400 Sobic006G263800 Sobic006G263800 Sobic001G142400--Sobic006G263800 Sobic001G142400--Sobic005G084000 Sobic001G215300 Sobic001G215300 Sobic001G142400--Sobic001G215300 Sobic002G190100 Sobic002G190100 Sobic001G142400--Sobic002G190100 Sobic001G142400--Sobic005G022800 Sobic001G142400--Sobic007G201400 Sobic008G021700 Sobic008G021700 Sobic001G142400--Sobic008G021700 Sobic001G236800 Sobic001G236800 Sobic001G142400--Sobic001G236800 Sobic002G140000 Sobic002G140000 Sobic001G142400--Sobic002G140000 Sobic002G114700 Sobic002G114700 Sobic003G114100--Sobic002G114700 Sobic001G076200 Sobic001G076200 Sobic003G114100--Sobic001G076200 Sobic008G078900 Sobic008G078900 Sobic003G114100--Sobic008G078900 Sobic010G052500 Sobic010G052500 Sobic003G114100--Sobic010G052500 Sobic003G014000 Sobic003G014000 Sobic003G114100--Sobic003G014000 Sobic003G114100--Sobic007G201400 Sobic003G114100--Sobic008G131700 Sobic006G273400 Sobic006G273400 Sobic003G114100--Sobic006G273400 Sobic001G514100 Sobic001G514100 Sobic003G114100--Sobic001G514100 Sobic008G131700--Sobic003G074700 Sobic008G131700--Sobic002G215000 Sobic008G131700--Sobic005G084000 Sobic008G131700--Sobic001G495300 Sobic008G131700--Sobic003G305300 Sobic004G246800 Sobic004G246800 Sobic008G131700--Sobic004G246800 Sobic008G131700--Sobic007G210600 Sobic006G060200 Sobic006G060200 Sobic008G131700--Sobic006G060200 Sobic002G209600 Sobic002G209600 Sobic008G131700--Sobic002G209600 Sobic005G084000--Sobic001G495300 Sobic005G084000--Sobic007G210600 Sobic005G084000--Sobic008G131700 Sobic005G084000--Sobic001G142400 Sobic005G084000--Sobic003G074700 Sobic004G143400 Sobic004G143400 Sobic005G084000--Sobic004G143400 Sobic009G083300 Sobic009G083300 Sobic005G084000--Sobic009G083300 Sobic005G084000--Sobic007G201400 Sobic003G069200 Sobic003G069200 Sobic005G084000--Sobic003G069200 Sobic005G022800--Sobic002G140000 Sobic005G022800--Sobic006G263800 Sobic004G255500 Sobic004G255500 Sobic005G022800--Sobic004G255500 Sobic003G373300 Sobic003G373300 Sobic005G022800--Sobic003G373300 Sobic005G197300 Sobic005G197300 Sobic005G022800--Sobic005G197300 Sobic005G022800--Sobic001G099000 Sobic007G116100 Sobic007G116100 Sobic005G022800--Sobic007G116100 Sobic010G027200 Sobic010G027200 Sobic005G022800--Sobic010G027200 Sobic005G022800--Sobic008G021700 Sobic007G210600--Sobic001G495300 Sobic007G210600--Sobic003G074700 Sobic007G210600--Sobic005G084000 Sobic007G210600--Sobic008G131700 Sobic007G210600--Sobic004G143400 Sobic007G210600--Sobic007G201400 Sobic009G136900 Sobic009G136900 Sobic007G210600--Sobic009G136900 Sobic006G248200 Sobic006G248200 Sobic007G210600--Sobic006G248200 Sobic004G015700 Sobic004G015700 Sobic007G210600--Sobic004G015700 Sobic002G158800 Sobic002G158800 Sobic001G099000--Sobic002G158800 Sobic005G184300 Sobic005G184300 Sobic001G099000--Sobic005G184300 Sobic007G015300 Sobic007G015300 Sobic001G099000--Sobic007G015300 Sobic002G081500 Sobic002G081500 Sobic001G099000--Sobic002G081500 Sobic001G099000--Sobic004G255500 Sobic001G099000--Sobic010G027200 Sobic001G099000--Sobic002G109000 Sobic001G099000--Sobic003G373300 Sobic006G166000 Sobic006G166000 Sobic001G099000--Sobic006G166000
Octagon: transcription factors


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