Gene annotation
Transcriptome id Sobic.010G153600.1
Synonym OTP84, Sb10g020540
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A194YJG5
Pfam PF14432 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF96
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G57430 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os04g02850.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a042365
Brachypodium KQJ81562
Barley HORVU0Hr1G001760.1 , HORVU0Hr1G001760.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G248200 - -
2 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
3 Sobic.006G256600 expressed protein -
4 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
5 Sobic.001G447700 expressed protein -
6 Sobic.004G068300 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
7 Sobic.002G065200 pentatricopeptide, putative, expressed -
8 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
9 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
10 Sobic.006G107600 plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed K19032: 30S ribosomal protein 3
11 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
12 Sobic.003G265500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
13 Sobic.009G085200 glyoxalase family protein, putative, expressed K01759: GLO1, lactoylglutathione lyase
14 Sobic.001G531200 methylthioribose kinase, putative, expressed -
15 Sobic.007G201400 pentatricopeptide, putative, expressed -
16 Sobic.001G196200 CRS1/YhbY domain containing protein, expressed -
17 Sobic.003G162900 expressed protein -
18 Sobic.002G251400 expressed protein -
19 Sobic.003G386300 expressed protein -
20 Sobic.001G514100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic010G153600 Sobic010G153600 Sobic006G248200 Sobic006G248200 Sobic010G153600--Sobic006G248200 Sobic003G085000 Sobic003G085000 Sobic010G153600--Sobic003G085000 Sobic006G256600 Sobic006G256600 Sobic010G153600--Sobic006G256600 Sobic005G184300 Sobic005G184300 Sobic010G153600--Sobic005G184300 Sobic001G447700 Sobic001G447700 Sobic010G153600--Sobic001G447700 Sobic004G068300 Sobic004G068300 Sobic010G153600--Sobic004G068300 Sobic002G065200 Sobic002G065200 Sobic010G153600--Sobic002G065200 Sobic002G198600 Sobic002G198600 Sobic010G153600--Sobic002G198600 Sobic010G255100 Sobic010G255100 Sobic010G153600--Sobic010G255100 Sobic003G386300 Sobic003G386300 Sobic006G248200--Sobic003G386300 Sobic001G240000 Sobic001G240000 Sobic006G248200--Sobic001G240000 Sobic001G531200 Sobic001G531200 Sobic006G248200--Sobic001G531200 Sobic006G248200--Sobic002G198600 Sobic003G030900 Sobic003G030900 Sobic006G248200--Sobic003G030900 Sobic001G475600 Sobic001G475600 Sobic006G248200--Sobic001G475600 Sobic004G054500 Sobic004G054500 Sobic006G248200--Sobic004G054500 Sobic002G305700 Sobic002G305700 Sobic006G248200--Sobic002G305700 Sobic004G311100 Sobic004G311100 Sobic006G248200--Sobic004G311100 Sobic003G085000--Sobic006G256600 Sobic001G291900 Sobic001G291900 Sobic003G085000--Sobic001G291900 Sobic006G055800 Sobic006G055800 Sobic003G085000--Sobic006G055800 Sobic003G085000--Sobic010G255100 Sobic004G336000 Sobic004G336000 Sobic003G085000--Sobic004G336000 Sobic001G531400 Sobic001G531400 Sobic003G085000--Sobic001G531400 Sobic005G002900 Sobic005G002900 Sobic003G085000--Sobic005G002900 Sobic001G104800 Sobic001G104800 Sobic003G085000--Sobic001G104800 Sobic004G065300 Sobic004G065300 Sobic003G085000--Sobic004G065300 Sobic006G256600--Sobic010G255100 Sobic006G256600--Sobic003G085000 Sobic006G256600--Sobic001G291900 Sobic006G210400 Sobic006G210400 Sobic006G256600--Sobic006G210400 Sobic002G297400 Sobic002G297400 Sobic006G256600--Sobic002G297400 Sobic006G256600--Sobic006G055800 Sobic006G256600--Sobic005G002900 Sobic001G309300 Sobic001G309300 Sobic006G256600--Sobic001G309300 Sobic006G256600--Sobic004G065300 Sobic001G099000 Sobic001G099000 Sobic005G184300--Sobic001G099000 Sobic007G101300 Sobic007G101300 Sobic005G184300--Sobic007G101300 Sobic003G128400 Sobic003G128400 Sobic005G184300--Sobic003G128400 Sobic002G158800 Sobic002G158800 Sobic005G184300--Sobic002G158800 Sobic001G003900 Sobic001G003900 Sobic005G184300--Sobic001G003900 Sobic005G184300--Sobic002G297400 Sobic002G081500 Sobic002G081500 Sobic005G184300--Sobic002G081500 Sobic005G184300--Sobic006G055800 Sobic005G110481 Sobic005G110481 Sobic005G184300--Sobic005G110481 Sobic001G447700--Sobic001G291900 Sobic001G447700--Sobic003G085000 Sobic001G447700--Sobic006G256600 Sobic001G035800 Sobic001G035800 Sobic001G447700--Sobic001G035800 Sobic001G447700--Sobic001G104800 Sobic001G447700--Sobic002G198600 Sobic001G295300 Sobic001G295300 Sobic001G447700--Sobic001G295300 Sobic001G308800 Sobic001G308800 Sobic001G447700--Sobic001G308800 Sobic006G107600 Sobic006G107600 Sobic001G447700--Sobic006G107600 Sobic004G234200 Sobic004G234200 Sobic004G068300--Sobic004G234200 Sobic001G041800 Sobic001G041800 Sobic004G068300--Sobic001G041800 Sobic002G030200 Sobic002G030200 Sobic004G068300--Sobic002G030200 Sobic004G068300--Sobic001G531200 Sobic008G117400 Sobic008G117400 Sobic004G068300--Sobic008G117400 Sobic004G068300--Sobic003G030900 Sobic006G222700 Sobic006G222700 Sobic004G068300--Sobic006G222700 Sobic010G022100 Sobic010G022100 Sobic004G068300--Sobic010G022100 Sobic001G206200 Sobic001G206200 Sobic004G068300--Sobic001G206200 Sobic002G065200--Sobic002G198600 Sobic008G063500 Sobic008G063500 Sobic002G065200--Sobic008G063500 Sobic010G011800 Sobic010G011800 Sobic002G065200--Sobic010G011800 Sobic004G175500 Sobic004G175500 Sobic002G065200--Sobic004G175500 Sobic004G227200 Sobic004G227200 Sobic002G065200--Sobic004G227200 Sobic001G029100 Sobic001G029100 Sobic002G065200--Sobic001G029100 Sobic002G316700 Sobic002G316700 Sobic002G065200--Sobic002G316700 Sobic001G177000 Sobic001G177000 Sobic002G065200--Sobic001G177000 Sobic002G288300 Sobic002G288300 Sobic002G065200--Sobic002G288300 Sobic003G433900 Sobic003G433900 Sobic002G198600--Sobic003G433900 Sobic002G198600--Sobic004G175500 Sobic009G091800 Sobic009G091800 Sobic002G198600--Sobic009G091800 Sobic003G132100 Sobic003G132100 Sobic002G198600--Sobic003G132100 Sobic002G198600--Sobic003G386300 Sobic009G030900 Sobic009G030900 Sobic002G198600--Sobic009G030900 Sobic002G198600--Sobic006G248200 Sobic002G198600--Sobic010G011800 Sobic002G198600--Sobic004G311100 Sobic010G255100--Sobic006G256600 Sobic010G255100--Sobic003G085000 Sobic001G382800 Sobic001G382800 Sobic010G255100--Sobic001G382800 Sobic010G255100--Sobic006G055800 Sobic005G014700 Sobic005G014700 Sobic010G255100--Sobic005G014700 Sobic010G255100--Sobic003G128400 Sobic010G255100--Sobic006G210400 Sobic001G308200 Sobic001G308200 Sobic010G255100--Sobic001G308200 Sobic001G102500 Sobic001G102500 Sobic010G255100--Sobic001G102500
Octagon: transcription factors


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