Gene annotation
Transcriptome id Sobic.003G265500.1
Synonym Sb03g031890
Functional annotation peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed
UniProt C5XHG6
Pfam PF01195
Panther DB PTHR17224 PTHR17224:SF5
NCBI CDD KOG2255; Peptidyl-tRNA hydrolase
KEGG Orthology K01056; PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
Gene Ontology GO:0004045; aminoacyl-tRNA hydrolase activity


Orthologs (automatic annotation)
TAIR AT1G18440 : Peptidyl-tRNA hydrolase family protein
RAP-DB (Rice) LOC_Os01g49900.1 : peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed
MaizeGDB (Corn) Zm00025a044446 , Zm00025a027928
Brachypodium KQK09296
Barley HORVU1Hr1G082650.3 , HORVU1Hr1G082650.6 , HORVU1Hr1G082650.8 , HORVU1Hr1G082650.9 , HORVU3Hr1G064740.8 , HORVU3Hr1G064740.9 , HORVU3Hr1G064740.4 , HORVU3Hr1G064740.5 , HORVU3Hr1G064740.7 , HORVU3Hr1G064740.1 , HORVU3Hr1G064740.2 , HORVU3Hr1G064740.3
Wheat TraesCS3B02G292800 , TraesCS1B02G391800 , TraesCS1D02G378700 , TraesCS1D02G378700 , TraesCS3D02G259700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G225100 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
2 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
3 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
4 Sobic.001G424300 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K08081: tropinone reductase I
5 Sobic.010G221600 histidine triad family protein, putative, expressed K02503: HINT1, hinT, histidine triad (HIT) family protein
6 Sobic.004G307400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
7 Sobic.004G065300 CR084 protein, putative, expressed -
8 Sobic.002G353300 Geranilgeranil pyrophosphate synthetase 1 GGPS1 (Os)(PubMedID : 27208977)@polyprenyl synthetase, putative, expressed K13789: geranylgeranyl diphosphate synthase, type II
9 Sobic.001G104800 expressed protein -
10 Sobic.003G162900 expressed protein -
11 Sobic.006G248200 - -
12 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
13 Sobic.003G386300 expressed protein -
14 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
15 Sobic.001G291900 expressed protein -
16 Sobic.001G447700 expressed protein -
17 Sobic.006G256600 expressed protein -
18 Sobic.004G040600 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
19 Sobic.009G085200 glyoxalase family protein, putative, expressed K01759: GLO1, lactoylglutathione lyase
20 Sobic.006G047300 Minichromosome maintenance (MCM2/3/5) family protein("PubMedID : 26759170,PubMedID : 24597475")@EMB1688, putative, expressed K06949: rsgA, ribosome biogenesis GTPase / thiamine phosphate phosphatase


Gene co-expression network
sample Sobic003G265500 Sobic003G265500 Sobic003G225100 Sobic003G225100 Sobic003G265500--Sobic003G225100 Sobic005G184300 Sobic005G184300 Sobic003G265500--Sobic005G184300 Sobic003G085000 Sobic003G085000 Sobic003G265500--Sobic003G085000 Sobic001G424300 Sobic001G424300 Sobic003G265500--Sobic001G424300 Sobic010G221600 Sobic010G221600 Sobic003G265500--Sobic010G221600 Sobic004G307400 Sobic004G307400 Sobic003G265500--Sobic004G307400 Sobic004G065300 Sobic004G065300 Sobic003G265500--Sobic004G065300 Sobic002G353300 Sobic002G353300 Sobic003G265500--Sobic002G353300 Sobic001G104800 Sobic001G104800 Sobic003G265500--Sobic001G104800 Sobic001G122400 Sobic001G122400 Sobic003G225100--Sobic001G122400 Sobic007G171800 Sobic007G171800 Sobic003G225100--Sobic007G171800 Sobic005G110481 Sobic005G110481 Sobic003G225100--Sobic005G110481 Sobic010G095200 Sobic010G095200 Sobic003G225100--Sobic010G095200 Sobic004G335800 Sobic004G335800 Sobic003G225100--Sobic004G335800 Sobic007G013400 Sobic007G013400 Sobic003G225100--Sobic007G013400 Sobic002G251400 Sobic002G251400 Sobic003G225100--Sobic002G251400 Sobic003G386300 Sobic003G386300 Sobic003G225100--Sobic003G386300 Sobic001G527100 Sobic001G527100 Sobic003G225100--Sobic001G527100 Sobic001G099000 Sobic001G099000 Sobic005G184300--Sobic001G099000 Sobic007G101300 Sobic007G101300 Sobic005G184300--Sobic007G101300 Sobic003G128400 Sobic003G128400 Sobic005G184300--Sobic003G128400 Sobic002G158800 Sobic002G158800 Sobic005G184300--Sobic002G158800 Sobic001G003900 Sobic001G003900 Sobic005G184300--Sobic001G003900 Sobic002G297400 Sobic002G297400 Sobic005G184300--Sobic002G297400 Sobic002G081500 Sobic002G081500 Sobic005G184300--Sobic002G081500 Sobic006G055800 Sobic006G055800 Sobic005G184300--Sobic006G055800 Sobic005G184300--Sobic005G110481 Sobic006G256600 Sobic006G256600 Sobic003G085000--Sobic006G256600 Sobic001G291900 Sobic001G291900 Sobic003G085000--Sobic001G291900 Sobic003G085000--Sobic006G055800 Sobic010G255100 Sobic010G255100 Sobic003G085000--Sobic010G255100 Sobic004G336000 Sobic004G336000 Sobic003G085000--Sobic004G336000 Sobic001G531400 Sobic001G531400 Sobic003G085000--Sobic001G531400 Sobic005G002900 Sobic005G002900 Sobic003G085000--Sobic005G002900 Sobic003G085000--Sobic001G104800 Sobic003G085000--Sobic004G065300 Sobic003G310100 Sobic003G310100 Sobic001G424300--Sobic003G310100 Sobic001G489800 Sobic001G489800 Sobic001G424300--Sobic001G489800 Sobic001G424300--Sobic003G128400 Sobic009G131600 Sobic009G131600 Sobic001G424300--Sobic009G131600 Sobic001G281500 Sobic001G281500 Sobic001G424300--Sobic001G281500 Sobic001G424300--Sobic005G002900 Sobic001G424300--Sobic006G055800 Sobic002G156100 Sobic002G156100 Sobic001G424300--Sobic002G156100 Sobic001G437200 Sobic001G437200 Sobic001G424300--Sobic001G437200 Sobic010G221600--Sobic003G265500 Sobic001G543700 Sobic001G543700 Sobic010G221600--Sobic001G543700 Sobic008G090900 Sobic008G090900 Sobic010G221600--Sobic008G090900 Sobic004G214400 Sobic004G214400 Sobic010G221600--Sobic004G214400 Sobic004G003900 Sobic004G003900 Sobic010G221600--Sobic004G003900 Sobic001G478600 Sobic001G478600 Sobic010G221600--Sobic001G478600 Sobic002G189600 Sobic002G189600 Sobic010G221600--Sobic002G189600 Sobic004G208600 Sobic004G208600 Sobic010G221600--Sobic004G208600 Sobic003G292300 Sobic003G292300 Sobic010G221600--Sobic003G292300 Sobic005G149400 Sobic005G149400 Sobic004G307400--Sobic005G149400 Sobic004G343900 Sobic004G343900 Sobic004G307400--Sobic004G343900 Sobic009G030800 Sobic009G030800 Sobic004G307400--Sobic009G030800 Sobic003G387100 Sobic003G387100 Sobic004G307400--Sobic003G387100 Sobic004G307400--Sobic001G291900 SobicK031800 SobicK031800 Sobic004G307400--SobicK031800 Sobic004G016400 Sobic004G016400 Sobic004G307400--Sobic004G016400 Sobic004G307400--Sobic004G336000 Sobic009G030900 Sobic009G030900 Sobic004G307400--Sobic009G030900 Sobic001G368500 Sobic001G368500 Sobic004G065300--Sobic001G368500 Sobic004G065300--Sobic006G055800 Sobic003G432500 Sobic003G432500 Sobic004G065300--Sobic003G432500 Sobic005G110400 Sobic005G110400 Sobic004G065300--Sobic005G110400 Sobic003G324700 Sobic003G324700 Sobic004G065300--Sobic003G324700 Sobic004G065300--Sobic006G256600 Sobic004G065300--Sobic005G002900 Sobic001G469933 Sobic001G469933 Sobic004G065300--Sobic001G469933 Sobic004G065300--Sobic002G297400 Sobic002G353300--Sobic001G122400 Sobic002G353300--Sobic003G324700 Sobic002G353300--Sobic003G386300 Sobic004G311100 Sobic004G311100 Sobic002G353300--Sobic004G311100 Sobic002G353300--Sobic004G335800 Sobic002G353300--Sobic001G291900 Sobic004G044200 Sobic004G044200 Sobic002G353300--Sobic004G044200 Sobic002G353300--Sobic001G527100 Sobic002G198000 Sobic002G198000 Sobic002G353300--Sobic002G198000 Sobic001G104800--Sobic001G291900 Sobic001G104800--Sobic009G030900 Sobic001G104800--Sobic001G368500 Sobic001G104800--Sobic001G469933 Sobic001G104800--Sobic001G122400 Sobic001G104800--Sobic003G324700 Sobic001G104800--Sobic004G335800 Sobic007G090400 Sobic007G090400 Sobic001G104800--Sobic007G090400 Sobic002G152800 Sobic002G152800 Sobic001G104800--Sobic002G152800
Octagon: transcription factors


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