Gene annotation
Transcriptome id Sobic.006G047300.1
Synonym emb1688, Sb06g012040
Functional annotation Minichromosome maintenance (MCM2/3/5) family protein( (PubMedID : 26759170,(PubMedID : 24597475)
EMB1688, putative, expressed
UniProt C5YEB8
Pfam PF00005
Panther DB PTHR32120 PTHR32120:SF2
NCBI CDD -
KEGG Orthology K06949; rsgA, ribosome biogenesis GTPase / thiamine phosphate phosphatase
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT1G67440 : Minichromosome maintenance (MCM2/3/5) family protein
RAP-DB (Rice) LOC_Os04g31270.1 : EMB1688, putative, expressed
MaizeGDB (Corn) Zm00025a055860
Brachypodium KQJ82240 , KQJ82239
Barley HORVU2Hr1G068980.2 , HORVU2Hr1G068980.1 , HORVU0Hr1G004200.1 , HORVU0Hr1G004200.2 , HORVU0Hr1G004200.3
Wheat TraesCS2B02G298700 , TraesCS2D02G280200 , TraesCS2A02G281400 , TraesCS2A02G281400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G040600 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
2 Sobic.006G091300 glutathione S-transferase, N-terminal domain containing protein, expressed K03354: anaphase-promoting complex subunit 7
3 Sobic.001G460200 PPR repeat domain containing protein, putative, expressed -
4 Sobic.004G015700 serine/threonine-protein kinase receptor precursor, putative, expressed -
5 Sobic.003G225100 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
6 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
7 Sobic.003G267500 expressed protein -
8 Sobic.007G015300 calreticulin family protein, expressed -
9 Sobic.003G265500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
10 Sobic.004G065300 CR084 protein, putative, expressed -
11 Sobic.001G161400 single-stranded DNA-binding protein, putative, expressed -
12 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
13 Sobic.003G162900 expressed protein -
14 Sobic.001G099000 expressed protein -
15 Sobic.004G301200 kinesin motor domain containing protein, expressed K11498: centromeric protein E
16 Sobic.003G439000 rubredoxin family protein, putative, expressed -
17 Sobic.004G314800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
19 Sobic.003G014000 peptidase C45, acyl-coenzyme A/6-aminopenicillanic acid acyl-transferase, putative, expressed -
20 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -


Gene co-expression network
sample Sobic006G047300 Sobic006G047300 Sobic004G040600 Sobic004G040600 Sobic006G047300--Sobic004G040600 Sobic006G091300 Sobic006G091300 Sobic006G047300--Sobic006G091300 Sobic001G460200 Sobic001G460200 Sobic006G047300--Sobic001G460200 Sobic004G015700 Sobic004G015700 Sobic006G047300--Sobic004G015700 Sobic003G225100 Sobic003G225100 Sobic006G047300--Sobic003G225100 Sobic006G111600 Sobic006G111600 Sobic006G047300--Sobic006G111600 Sobic003G267500 Sobic003G267500 Sobic006G047300--Sobic003G267500 Sobic007G015300 Sobic007G015300 Sobic006G047300--Sobic007G015300 Sobic003G265500 Sobic003G265500 Sobic006G047300--Sobic003G265500 Sobic004G040600--Sobic006G047300 Sobic001G099000 Sobic001G099000 Sobic004G040600--Sobic001G099000 Sobic002G081500 Sobic002G081500 Sobic004G040600--Sobic002G081500 Sobic003G439000 Sobic003G439000 Sobic004G040600--Sobic003G439000 Sobic003G386300 Sobic003G386300 Sobic004G040600--Sobic003G386300 Sobic001G495300 Sobic001G495300 Sobic004G040600--Sobic001G495300 Sobic001G489800 Sobic001G489800 Sobic004G040600--Sobic001G489800 Sobic001G168800 Sobic001G168800 Sobic004G040600--Sobic001G168800 Sobic002G109000 Sobic002G109000 Sobic004G040600--Sobic002G109000 Sobic004G055500 Sobic004G055500 Sobic006G091300--Sobic004G055500 Sobic006G106400 Sobic006G106400 Sobic006G091300--Sobic006G106400 Sobic001G291900 Sobic001G291900 Sobic006G091300--Sobic001G291900 Sobic008G172700 Sobic008G172700 Sobic006G091300--Sobic008G172700 Sobic004G301200 Sobic004G301200 Sobic006G091300--Sobic004G301200 Sobic003G162900 Sobic003G162900 Sobic006G091300--Sobic003G162900 Sobic004G165000 Sobic004G165000 Sobic006G091300--Sobic004G165000 Sobic006G091300--Sobic006G047300 Sobic001G277400 Sobic001G277400 Sobic006G091300--Sobic001G277400 Sobic001G460200--Sobic006G047300 Sobic006G263800 Sobic006G263800 Sobic001G460200--Sobic006G263800 Sobic001G281500 Sobic001G281500 Sobic001G460200--Sobic001G281500 Sobic003G114100 Sobic003G114100 Sobic001G460200--Sobic003G114100 Sobic001G460200--Sobic004G015700 Sobic004G255500 Sobic004G255500 Sobic001G460200--Sobic004G255500 Sobic001G460200--Sobic001G099000 Sobic002G140000 Sobic002G140000 Sobic001G460200--Sobic002G140000 Sobic006G204100 Sobic006G204100 Sobic001G460200--Sobic006G204100 Sobic004G015700--Sobic006G263800 Sobic003G383500 Sobic003G383500 Sobic004G015700--Sobic003G383500 Sobic009G083300 Sobic009G083300 Sobic004G015700--Sobic009G083300 Sobic007G013400 Sobic007G013400 Sobic004G015700--Sobic007G013400 Sobic004G015700--Sobic001G099000 Sobic001G236800 Sobic001G236800 Sobic004G015700--Sobic001G236800 Sobic002G190100 Sobic002G190100 Sobic004G015700--Sobic002G190100 Sobic009G212000 Sobic009G212000 Sobic004G015700--Sobic009G212000 Sobic003G261200 Sobic003G261200 Sobic004G015700--Sobic003G261200 Sobic001G122400 Sobic001G122400 Sobic003G225100--Sobic001G122400 Sobic007G171800 Sobic007G171800 Sobic003G225100--Sobic007G171800 Sobic005G110481 Sobic005G110481 Sobic003G225100--Sobic005G110481 Sobic010G095200 Sobic010G095200 Sobic003G225100--Sobic010G095200 Sobic004G335800 Sobic004G335800 Sobic003G225100--Sobic004G335800 Sobic003G225100--Sobic007G013400 Sobic002G251400 Sobic002G251400 Sobic003G225100--Sobic002G251400 Sobic003G225100--Sobic003G386300 Sobic001G527100 Sobic001G527100 Sobic003G225100--Sobic001G527100 Sobic003G330100 Sobic003G330100 Sobic006G111600--Sobic003G330100 Sobic003G221700 Sobic003G221700 Sobic006G111600--Sobic003G221700 Sobic002G131700 Sobic002G131700 Sobic006G111600--Sobic002G131700 Sobic004G179200 Sobic004G179200 Sobic006G111600--Sobic004G179200 Sobic009G234200 Sobic009G234200 Sobic006G111600--Sobic009G234200 Sobic004G250200 Sobic004G250200 Sobic006G111600--Sobic004G250200 Sobic010G183400 Sobic010G183400 Sobic006G111600--Sobic010G183400 Sobic006G197700 Sobic006G197700 Sobic006G111600--Sobic006G197700 Sobic009G028400 Sobic009G028400 Sobic006G111600--Sobic009G028400 Sobic001G025800 Sobic001G025800 Sobic003G267500--Sobic001G025800 Sobic005G117300 Sobic005G117300 Sobic003G267500--Sobic005G117300 Sobic010G204900 Sobic010G204900 Sobic003G267500--Sobic010G204900 Sobic003G267500--Sobic006G047300 Sobic003G267500--Sobic004G301200 Sobic009G005400 Sobic009G005400 Sobic003G267500--Sobic009G005400 Sobic002G013700 Sobic002G013700 Sobic003G267500--Sobic002G013700 Sobic010G134500 Sobic010G134500 Sobic003G267500--Sobic010G134500 Sobic007G090537 Sobic007G090537 Sobic003G267500--Sobic007G090537 Sobic007G015300--Sobic001G099000 Sobic002G158800 Sobic002G158800 Sobic007G015300--Sobic002G158800 Sobic004G338300 Sobic004G338300 Sobic007G015300--Sobic004G338300 Sobic010G027200 Sobic010G027200 Sobic007G015300--Sobic010G027200 Sobic007G015300--Sobic002G140000 Sobic005G184300 Sobic005G184300 Sobic007G015300--Sobic005G184300 Sobic001G375000 Sobic001G375000 Sobic007G015300--Sobic001G375000 Sobic007G116100 Sobic007G116100 Sobic007G015300--Sobic007G116100 Sobic003G128400 Sobic003G128400 Sobic007G015300--Sobic003G128400 Sobic003G265500--Sobic003G225100 Sobic003G265500--Sobic005G184300 Sobic003G085000 Sobic003G085000 Sobic003G265500--Sobic003G085000 Sobic001G424300 Sobic001G424300 Sobic003G265500--Sobic001G424300 Sobic010G221600 Sobic010G221600 Sobic003G265500--Sobic010G221600 Sobic004G307400 Sobic004G307400 Sobic003G265500--Sobic004G307400 Sobic004G065300 Sobic004G065300 Sobic003G265500--Sobic004G065300 Sobic002G353300 Sobic002G353300 Sobic003G265500--Sobic002G353300 Sobic001G104800 Sobic001G104800 Sobic003G265500--Sobic001G104800
Octagon: transcription factors


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