Gene annotation
Transcriptome id Sobic.006G248200.1
Synonym Sb06g031340
Functional annotation -
UniProt C5Y9J0
Pfam -
Panther DB PTHR37225
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G22210 : -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G386300 expressed protein -
2 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
3 Sobic.001G531200 methylthioribose kinase, putative, expressed -
4 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
5 Sobic.003G030900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.001G475600 prenyltransferase, putative, expressed K02548: 1,4-dihydroxy-2-naphthoate polyprenyltransferase
7 Sobic.004G054500 porphobilinogen deaminase, chloroplast precursor, putative, expressed K01749: hemC, hydroxymethylbilane synthase
8 Sobic.002G305700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
9 Sobic.004G311100 -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
10 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
11 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
12 Sobic.002G251400 expressed protein -
13 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
14 Sobic.001G333000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
15 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
16 Sobic.010G022100 magnesium-protoporphyrin O-methyltransferase, putative, expressed K03428: bchM, magnesium-protoporphyrin O-methyltransferase
17 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
18 Sobic.004G314800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.006G107600 plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed K19032: 30S ribosomal protein 3
20 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11


Gene co-expression network
sample Sobic006G248200 Sobic006G248200 Sobic003G386300 Sobic003G386300 Sobic006G248200--Sobic003G386300 Sobic001G240000 Sobic001G240000 Sobic006G248200--Sobic001G240000 Sobic001G531200 Sobic001G531200 Sobic006G248200--Sobic001G531200 Sobic002G198600 Sobic002G198600 Sobic006G248200--Sobic002G198600 Sobic003G030900 Sobic003G030900 Sobic006G248200--Sobic003G030900 Sobic001G475600 Sobic001G475600 Sobic006G248200--Sobic001G475600 Sobic004G054500 Sobic004G054500 Sobic006G248200--Sobic004G054500 Sobic002G305700 Sobic002G305700 Sobic006G248200--Sobic002G305700 Sobic004G311100 Sobic004G311100 Sobic006G248200--Sobic004G311100 Sobic001G122400 Sobic001G122400 Sobic003G386300--Sobic001G122400 Sobic004G335800 Sobic004G335800 Sobic003G386300--Sobic004G335800 Sobic001G527100 Sobic001G527100 Sobic003G386300--Sobic001G527100 Sobic002G198000 Sobic002G198000 Sobic003G386300--Sobic002G198000 Sobic003G386300--Sobic001G240000 Sobic010G095200 Sobic010G095200 Sobic003G386300--Sobic010G095200 Sobic001G040000 Sobic001G040000 Sobic003G386300--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic003G386300--Sobic004G164100 Sobic003G386300--Sobic001G475600 Sobic001G240000--Sobic001G527100 Sobic001G240000--Sobic001G040000 Sobic001G240000--Sobic001G122400 Sobic001G240000--Sobic003G386300 Sobic001G391400 Sobic001G391400 Sobic001G240000--Sobic001G391400 Sobic002G251400 Sobic002G251400 Sobic001G240000--Sobic002G251400 Sobic001G240000--Sobic004G335800 Sobic003G328200 Sobic003G328200 Sobic001G240000--Sobic003G328200 Sobic001G240000--Sobic002G198000 Sobic001G531200--Sobic006G248200 Sobic001G531200--Sobic003G386300 Sobic001G531200--Sobic001G240000 Sobic001G531200--Sobic001G527100 Sobic001G531200--Sobic001G475600 Sobic001G333000 Sobic001G333000 Sobic001G531200--Sobic001G333000 Sobic001G531200--Sobic001G040000 Sobic001G531200--Sobic002G198600 Sobic001G531200--Sobic001G122400 Sobic003G433900 Sobic003G433900 Sobic002G198600--Sobic003G433900 Sobic004G175500 Sobic004G175500 Sobic002G198600--Sobic004G175500 Sobic009G091800 Sobic009G091800 Sobic002G198600--Sobic009G091800 Sobic003G132100 Sobic003G132100 Sobic002G198600--Sobic003G132100 Sobic002G198600--Sobic003G386300 Sobic009G030900 Sobic009G030900 Sobic002G198600--Sobic009G030900 Sobic002G198600--Sobic006G248200 Sobic010G011800 Sobic010G011800 Sobic002G198600--Sobic010G011800 Sobic002G198600--Sobic004G311100 Sobic001G027600 Sobic001G027600 Sobic003G030900--Sobic001G027600 Sobic004G044000 Sobic004G044000 Sobic003G030900--Sobic004G044000 Sobic003G030900--Sobic006G248200 Sobic003G030900--Sobic001G040000 Sobic003G030900--Sobic001G240000 Sobic007G013400 Sobic007G013400 Sobic003G030900--Sobic007G013400 Sobic002G242600 Sobic002G242600 Sobic003G030900--Sobic002G242600 Sobic004G317900 Sobic004G317900 Sobic003G030900--Sobic004G317900 Sobic003G030900--Sobic001G531200 Sobic001G475600--Sobic003G386300 Sobic001G475600--Sobic007G013400 Sobic001G475600--Sobic001G040000 Sobic001G475600--Sobic002G251400 Sobic001G475600--Sobic004G335800 Sobic001G475600--Sobic010G095200 Sobic003G295800 Sobic003G295800 Sobic001G475600--Sobic003G295800 Sobic001G475600--Sobic001G122400 Sobic007G143700 Sobic007G143700 Sobic001G475600--Sobic007G143700 Sobic001G203000 Sobic001G203000 Sobic004G054500--Sobic001G203000 Sobic008G051000 Sobic008G051000 Sobic004G054500--Sobic008G051000 Sobic004G054500--Sobic007G143700 Sobic004G054500--Sobic004G317900 Sobic004G054500--Sobic001G040000 Sobic010G255600 Sobic010G255600 Sobic004G054500--Sobic010G255600 Sobic004G054500--Sobic004G335800 Sobic003G157400 Sobic003G157400 Sobic004G054500--Sobic003G157400 Sobic004G054500--Sobic003G386300 Sobic001G191000 Sobic001G191000 Sobic002G305700--Sobic001G191000 Sobic002G305700--Sobic001G333000 Sobic003G256200 Sobic003G256200 Sobic002G305700--Sobic003G256200 Sobic006G107600 Sobic006G107600 Sobic002G305700--Sobic006G107600 Sobic004G191200 Sobic004G191200 Sobic002G305700--Sobic004G191200 Sobic006G280050 Sobic006G280050 Sobic002G305700--Sobic006G280050 Sobic002G305700--Sobic006G248200 Sobic009G212000 Sobic009G212000 Sobic002G305700--Sobic009G212000 Sobic002G305700--Sobic001G240000 Sobic008G112300 Sobic008G112300 Sobic004G311100--Sobic008G112300 Sobic004G311100--Sobic007G143700 Sobic004G311100--Sobic003G386300 Sobic004G311100--Sobic004G335800 Sobic004G311100--Sobic001G122400 Sobic004G311100--Sobic001G527100 Sobic004G116100 Sobic004G116100 Sobic004G311100--Sobic004G116100 Sobic004G311100--Sobic003G328200 Sobic002G271700 Sobic002G271700 Sobic004G311100--Sobic002G271700
Octagon: transcription factors


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