Gene annotation
Transcriptome id Sobic.003G074700.1
Synonym Sb03g006310
Functional annotation thylakoid lumenal protein, putative, expressed
UniProt C5XQ28
Pfam PF00805
Panther DB PTHR14136
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G44920 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g05080.1 : thylakoid lumenal protein, putative, expressed
MaizeGDB (Corn) Zm00025a035613
Brachypodium KQK02663
Barley HORVU3Hr1G011620.7 , HORVU3Hr1G011620.6 , HORVU3Hr1G011620.5 , HORVU3Hr1G011620.4 , HORVU3Hr1G011620.3 , HORVU3Hr1G011620.2 , HORVU3Hr1G011620.1 , HORVU3Hr1G011620.9 , HORVU3Hr1G011620.8 , HORVU3Hr1G011620.12 , HORVU3Hr1G011620.11 , HORVU3Hr1G011620.10
Wheat TraesCS3B02G073200 , TraesCS3B02G073000 , TraesCS3A02G060300 , TraesCS3D02G060600
Populus -


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cDNA sequences
Sobic.003G074700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G131700 PsbP, putative, expressed -
2 Sobic.002G215000 chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
3 Sobic.001G495300 expressed protein -
4 Sobic.007G210600 ABC transporter, ATP-binding protein, putative, expressed -
5 Sobic.007G201400 pentatricopeptide, putative, expressed -
6 Sobic.005G084000 expressed protein -
7 Sobic.004G068300 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
8 Sobic.003G305300 - -
9 Sobic.003G030900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.002G242600 expressed protein -
11 Sobic.001G041800 -(PubMedID : 29017446)@magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed K03404: chlD, magnesium chelatase subunit D
12 Sobic.006G166000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
13 Sobic.006G060200 basic proline-rich protein, putative, expressed -
14 Sobic.004G246800 pentatricopeptide, putative, expressed -
15 Sobic.006G248200 - -
16 Sobic.001G514100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.002G305700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
18 Sobic.003G114100 expressed protein -
19 Sobic.001G142400 RIO1 family protein, expressed -
20 Sobic.001G269300 OsFBD15 - F-box and FBD domain containing protein, expressed -


Gene co-expression network
sample Sobic003G074700 Sobic003G074700 Sobic008G131700 Sobic008G131700 Sobic003G074700--Sobic008G131700 Sobic002G215000 Sobic002G215000 Sobic003G074700--Sobic002G215000 Sobic001G495300 Sobic001G495300 Sobic003G074700--Sobic001G495300 Sobic007G210600 Sobic007G210600 Sobic003G074700--Sobic007G210600 Sobic007G201400 Sobic007G201400 Sobic003G074700--Sobic007G201400 Sobic005G084000 Sobic005G084000 Sobic003G074700--Sobic005G084000 Sobic004G068300 Sobic004G068300 Sobic003G074700--Sobic004G068300 Sobic003G305300 Sobic003G305300 Sobic003G074700--Sobic003G305300 Sobic003G030900 Sobic003G030900 Sobic003G074700--Sobic003G030900 Sobic008G131700--Sobic003G074700 Sobic008G131700--Sobic002G215000 Sobic008G131700--Sobic005G084000 Sobic008G131700--Sobic001G495300 Sobic008G131700--Sobic003G305300 Sobic004G246800 Sobic004G246800 Sobic008G131700--Sobic004G246800 Sobic008G131700--Sobic007G210600 Sobic006G060200 Sobic006G060200 Sobic008G131700--Sobic006G060200 Sobic002G209600 Sobic002G209600 Sobic008G131700--Sobic002G209600 Sobic002G215000--Sobic003G074700 Sobic002G215000--Sobic008G131700 Sobic002G215000--Sobic006G060200 Sobic002G215000--Sobic003G305300 Sobic002G215000--Sobic004G068300 Sobic009G164300 Sobic009G164300 Sobic002G215000--Sobic009G164300 Sobic002G077000 Sobic002G077000 Sobic002G215000--Sobic002G077000 Sobic006G222700 Sobic006G222700 Sobic002G215000--Sobic006G222700 Sobic006G229300 Sobic006G229300 Sobic002G215000--Sobic006G229300 Sobic001G495300--Sobic007G210600 Sobic001G495300--Sobic003G074700 Sobic001G495300--Sobic005G084000 Sobic003G137100 Sobic003G137100 Sobic001G495300--Sobic003G137100 Sobic001G041800 Sobic001G041800 Sobic001G495300--Sobic001G041800 Sobic002G109000 Sobic002G109000 Sobic001G495300--Sobic002G109000 Sobic001G099000 Sobic001G099000 Sobic001G495300--Sobic001G099000 Sobic001G495300--Sobic008G131700 Sobic001G495300--Sobic007G201400 Sobic007G210600--Sobic001G495300 Sobic007G210600--Sobic003G074700 Sobic007G210600--Sobic005G084000 Sobic007G210600--Sobic008G131700 Sobic004G143400 Sobic004G143400 Sobic007G210600--Sobic004G143400 Sobic007G210600--Sobic007G201400 Sobic009G136900 Sobic009G136900 Sobic007G210600--Sobic009G136900 Sobic006G248200 Sobic006G248200 Sobic007G210600--Sobic006G248200 Sobic004G015700 Sobic004G015700 Sobic007G210600--Sobic004G015700 Sobic007G201400--Sobic003G074700 Sobic007G201400--Sobic001G495300 Sobic001G142400 Sobic001G142400 Sobic007G201400--Sobic001G142400 Sobic003G114100 Sobic003G114100 Sobic007G201400--Sobic003G114100 Sobic007G201400--Sobic008G131700 Sobic007G201400--Sobic005G084000 Sobic005G022800 Sobic005G022800 Sobic007G201400--Sobic005G022800 Sobic007G201400--Sobic007G210600 Sobic007G201400--Sobic001G099000 Sobic005G084000--Sobic001G495300 Sobic005G084000--Sobic007G210600 Sobic005G084000--Sobic008G131700 Sobic005G084000--Sobic001G142400 Sobic005G084000--Sobic003G074700 Sobic005G084000--Sobic004G143400 Sobic009G083300 Sobic009G083300 Sobic005G084000--Sobic009G083300 Sobic005G084000--Sobic007G201400 Sobic003G069200 Sobic003G069200 Sobic005G084000--Sobic003G069200 Sobic004G234200 Sobic004G234200 Sobic004G068300--Sobic004G234200 Sobic004G068300--Sobic001G041800 Sobic002G030200 Sobic002G030200 Sobic004G068300--Sobic002G030200 Sobic001G531200 Sobic001G531200 Sobic004G068300--Sobic001G531200 Sobic008G117400 Sobic008G117400 Sobic004G068300--Sobic008G117400 Sobic004G068300--Sobic003G030900 Sobic004G068300--Sobic006G222700 Sobic010G022100 Sobic010G022100 Sobic004G068300--Sobic010G022100 Sobic001G206200 Sobic001G206200 Sobic004G068300--Sobic001G206200 Sobic003G305300--Sobic008G131700 Sobic003G305300--Sobic002G215000 Sobic009G212000 Sobic009G212000 Sobic003G305300--Sobic009G212000 Sobic003G132300 Sobic003G132300 Sobic003G305300--Sobic003G132300 Sobic003G305300--Sobic003G074700 Sobic003G305300--Sobic005G084000 Sobic003G305300--Sobic006G229300 Sobic003G305300--Sobic007G210600 Sobic003G305300--Sobic009G136900 Sobic001G027600 Sobic001G027600 Sobic003G030900--Sobic001G027600 Sobic004G044000 Sobic004G044000 Sobic003G030900--Sobic004G044000 Sobic003G030900--Sobic006G248200 Sobic001G040000 Sobic001G040000 Sobic003G030900--Sobic001G040000 Sobic001G240000 Sobic001G240000 Sobic003G030900--Sobic001G240000 Sobic007G013400 Sobic007G013400 Sobic003G030900--Sobic007G013400 Sobic002G242600 Sobic002G242600 Sobic003G030900--Sobic002G242600 Sobic004G317900 Sobic004G317900 Sobic003G030900--Sobic004G317900 Sobic003G030900--Sobic001G531200
Octagon: transcription factors


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