Gene annotation
Transcriptome id Sobic.008G131700.2,Sobic.008G131700.1
Synonym Sb08g018390
Functional annotation PsbP, putative, expressed
UniProt A0A1Z5R6D4 , C5YPV3
Pfam PF01789
Panther DB PTHR31407 PTHR31407:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0015979; photosynthesis GO:0009654photosystem II oxygen evolving complex GO:0009523photosystem II GO:0005509calcium ion binding


Orthologs (automatic annotation)
TAIR AT4G15510 : Photosystem II reaction center PsbP family protein
RAP-DB (Rice) LOC_Os12g37710.1 : PsbP, putative, expressed
MaizeGDB (Corn) Zm00025a004169
Brachypodium -
Barley -
Wheat TraesCS5B02G093100 , TraesCS5D02G099000 , TraesCS5A02G087200
Populus -


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cDNA sequences
Sobic.008G131700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G074700 thylakoid lumenal protein, putative, expressed -
2 Sobic.002G215000 chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
3 Sobic.005G084000 expressed protein -
4 Sobic.001G495300 expressed protein -
5 Sobic.003G305300 - -
6 Sobic.004G246800 pentatricopeptide, putative, expressed -
7 Sobic.007G210600 ABC transporter, ATP-binding protein, putative, expressed -
8 Sobic.006G060200 basic proline-rich protein, putative, expressed -
9 Sobic.002G209600 CBS domain containing protein, expressed -
10 Sobic.003G114100 expressed protein -
11 Sobic.007G201400 pentatricopeptide, putative, expressed -
12 Sobic.001G269300 OsFBD15 - F-box and FBD domain containing protein, expressed -
13 Sobic.004G315800 ZOS2-17 - C2H2 zinc finger protein, expressed -
14 Sobic.001G514100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.009G083300 white-brown complex homolog protein 12, putative, expressed -
16 Sobic.001G076200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf44, putative, expressed K07399: resB, cytochrome c biogenesis protein
17 Sobic.008G021700 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
18 Sobic.006G166000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
19 Sobic.001G217700 possible lysine decarboxylase domain containing protein, expressed -
20 Sobic.001G099000 expressed protein -


Gene co-expression network
sample Sobic008G131700 Sobic008G131700 Sobic003G074700 Sobic003G074700 Sobic008G131700--Sobic003G074700 Sobic002G215000 Sobic002G215000 Sobic008G131700--Sobic002G215000 Sobic005G084000 Sobic005G084000 Sobic008G131700--Sobic005G084000 Sobic001G495300 Sobic001G495300 Sobic008G131700--Sobic001G495300 Sobic003G305300 Sobic003G305300 Sobic008G131700--Sobic003G305300 Sobic004G246800 Sobic004G246800 Sobic008G131700--Sobic004G246800 Sobic007G210600 Sobic007G210600 Sobic008G131700--Sobic007G210600 Sobic006G060200 Sobic006G060200 Sobic008G131700--Sobic006G060200 Sobic002G209600 Sobic002G209600 Sobic008G131700--Sobic002G209600 Sobic003G074700--Sobic008G131700 Sobic003G074700--Sobic002G215000 Sobic003G074700--Sobic001G495300 Sobic003G074700--Sobic007G210600 Sobic007G201400 Sobic007G201400 Sobic003G074700--Sobic007G201400 Sobic003G074700--Sobic005G084000 Sobic004G068300 Sobic004G068300 Sobic003G074700--Sobic004G068300 Sobic003G074700--Sobic003G305300 Sobic003G030900 Sobic003G030900 Sobic003G074700--Sobic003G030900 Sobic002G215000--Sobic003G074700 Sobic002G215000--Sobic008G131700 Sobic002G215000--Sobic006G060200 Sobic002G215000--Sobic003G305300 Sobic002G215000--Sobic004G068300 Sobic009G164300 Sobic009G164300 Sobic002G215000--Sobic009G164300 Sobic002G077000 Sobic002G077000 Sobic002G215000--Sobic002G077000 Sobic006G222700 Sobic006G222700 Sobic002G215000--Sobic006G222700 Sobic006G229300 Sobic006G229300 Sobic002G215000--Sobic006G229300 Sobic005G084000--Sobic001G495300 Sobic005G084000--Sobic007G210600 Sobic005G084000--Sobic008G131700 Sobic001G142400 Sobic001G142400 Sobic005G084000--Sobic001G142400 Sobic005G084000--Sobic003G074700 Sobic004G143400 Sobic004G143400 Sobic005G084000--Sobic004G143400 Sobic009G083300 Sobic009G083300 Sobic005G084000--Sobic009G083300 Sobic005G084000--Sobic007G201400 Sobic003G069200 Sobic003G069200 Sobic005G084000--Sobic003G069200 Sobic001G495300--Sobic007G210600 Sobic001G495300--Sobic003G074700 Sobic001G495300--Sobic005G084000 Sobic003G137100 Sobic003G137100 Sobic001G495300--Sobic003G137100 Sobic001G041800 Sobic001G041800 Sobic001G495300--Sobic001G041800 Sobic002G109000 Sobic002G109000 Sobic001G495300--Sobic002G109000 Sobic001G099000 Sobic001G099000 Sobic001G495300--Sobic001G099000 Sobic001G495300--Sobic008G131700 Sobic001G495300--Sobic007G201400 Sobic003G305300--Sobic008G131700 Sobic003G305300--Sobic002G215000 Sobic009G212000 Sobic009G212000 Sobic003G305300--Sobic009G212000 Sobic003G132300 Sobic003G132300 Sobic003G305300--Sobic003G132300 Sobic003G305300--Sobic003G074700 Sobic003G305300--Sobic005G084000 Sobic003G305300--Sobic006G229300 Sobic003G305300--Sobic007G210600 Sobic009G136900 Sobic009G136900 Sobic003G305300--Sobic009G136900 Sobic001G076200 Sobic001G076200 Sobic004G246800--Sobic001G076200 Sobic004G246800--Sobic002G209600 Sobic004G246800--Sobic008G131700 Sobic008G021700 Sobic008G021700 Sobic004G246800--Sobic008G021700 Sobic005G022800 Sobic005G022800 Sobic004G246800--Sobic005G022800 Sobic004G151900 Sobic004G151900 Sobic004G246800--Sobic004G151900 Sobic001G514100 Sobic001G514100 Sobic004G246800--Sobic001G514100 Sobic005G197300 Sobic005G197300 Sobic004G246800--Sobic005G197300 Sobic004G255500 Sobic004G255500 Sobic004G246800--Sobic004G255500 Sobic007G210600--Sobic001G495300 Sobic007G210600--Sobic003G074700 Sobic007G210600--Sobic005G084000 Sobic007G210600--Sobic008G131700 Sobic007G210600--Sobic004G143400 Sobic007G210600--Sobic007G201400 Sobic007G210600--Sobic009G136900 Sobic006G248200 Sobic006G248200 Sobic007G210600--Sobic006G248200 Sobic004G015700 Sobic004G015700 Sobic007G210600--Sobic004G015700 Sobic001G269300 Sobic001G269300 Sobic006G060200--Sobic001G269300 Sobic006G060200--Sobic002G215000 Sobic001G217700 Sobic001G217700 Sobic006G060200--Sobic001G217700 Sobic006G060200--Sobic008G131700 Sobic001G233400 Sobic001G233400 Sobic006G060200--Sobic001G233400 Sobic005G036600 Sobic005G036600 Sobic006G060200--Sobic005G036600 Sobic006G060200--Sobic003G137100 Sobic006G060200--Sobic001G495300 Sobic006G060200--Sobic005G084000 Sobic002G209600--Sobic004G246800 Sobic007G052900 Sobic007G052900 Sobic002G209600--Sobic007G052900 Sobic006G191400 Sobic006G191400 Sobic002G209600--Sobic006G191400 Sobic002G209600--Sobic001G269300 Sobic009G251300 Sobic009G251300 Sobic002G209600--Sobic009G251300 Sobic005G063700 Sobic005G063700 Sobic002G209600--Sobic005G063700 Sobic002G209600--Sobic008G131700 Sobic007G076700 Sobic007G076700 Sobic002G209600--Sobic007G076700 Sobic002G330400 Sobic002G330400 Sobic002G209600--Sobic002G330400
Octagon: transcription factors


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