Gene annotation
Transcriptome id Sobic.001G217700.1,Sobic.001G217700.2
Synonym Sb01g019170
Functional annotation possible lysine decarboxylase domain containing protein, expressed
UniProt A0A1Z5S7B4 , C5WYD9
Pfam PF03641
Panther DB PTHR31223 PTHR31223:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G37210 : lysine decarboxylase family protein
RAP-DB (Rice) LOC_Os10g33900.1 : possible lysine decarboxylase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a006586 , Zm00025a017612
Brachypodium KQJ97117 , KQJ97118
Barley HORVU4Hr1G079860.8 , HORVU4Hr1G079860.9 , HORVU4Hr1G079860.1 , HORVU4Hr1G079860.3 , HORVU4Hr1G079860.4 , HORVU4Hr1G079860.5 , HORVU4Hr1G079860.7 , HORVU4Hr1G079860.12 , HORVU4Hr1G079860.13 , HORVU4Hr1G079860.10 , HORVU4Hr1G079860.11 , HORVU4Hr1G079860.16 , HORVU4Hr1G079860.14 , HORVU4Hr1G079860.15
Wheat TraesCS2D02G376900 , TraesCS1B02G173200 , TraesCS1B02G173200 , TraesCS1D02G154700 , TraesCS2A02G380600 , TraesCS2B02G397600 , TraesCS2B02G397600 , TraesCS1A02G156100
Populus -


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cDNA sequences
Sobic.001G217700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G060200 basic proline-rich protein, putative, expressed -
2 Sobic.002G104000 - -
3 Sobic.006G249050 - -
4 Sobic.002G376700 EF hand family protein, putative -
5 Sobic.003G110700 nuclear transport factor, putative, expressed -
6 Sobic.001G269300 OsFBD15 - F-box and FBD domain containing protein, expressed -
7 Sobic.006G102400 transporter family protein, putative, expressed -
8 Sobic.005G036600 calmodulin-binding protein, putative, expressed -
9 Sobic.010G246600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed -
10 Sobic.008G101500 powdery mildew resistance protein PM3b, putative, expressed -
11 Sobic.008G104801 - -
12 Sobic.007G052900 acetyltransferase, GNAT family, putative, expressed -
13 Sobic.008G131700 PsbP, putative, expressed -
14 Sobic.002G215000 chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
15 Sobic.008G118000 Glutaredoxin family protein (At)(PubMedID : 27208977)@OsGrx_C11 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
16 Sobic.004G315800 ZOS2-17 - C2H2 zinc finger protein, expressed -
17 Sobic.003G114100 expressed protein -
18 Sobic.008G183200 LOL3, putative, expressed -
19 Sobic.008G117800 OsGrx_C12 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
20 Sobic.003G137100 protoporphyrinogen oxidase, chloroplast precursor, putative, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase


Gene co-expression network
sample Sobic001G217700 Sobic001G217700 Sobic006G060200 Sobic006G060200 Sobic001G217700--Sobic006G060200 Sobic002G104000 Sobic002G104000 Sobic001G217700--Sobic002G104000 Sobic006G249050 Sobic006G249050 Sobic001G217700--Sobic006G249050 Sobic002G376700 Sobic002G376700 Sobic001G217700--Sobic002G376700 Sobic003G110700 Sobic003G110700 Sobic001G217700--Sobic003G110700 Sobic001G269300 Sobic001G269300 Sobic001G217700--Sobic001G269300 Sobic006G102400 Sobic006G102400 Sobic001G217700--Sobic006G102400 Sobic005G036600 Sobic005G036600 Sobic001G217700--Sobic005G036600 Sobic010G246600 Sobic010G246600 Sobic001G217700--Sobic010G246600 Sobic006G060200--Sobic001G269300 Sobic002G215000 Sobic002G215000 Sobic006G060200--Sobic002G215000 Sobic006G060200--Sobic001G217700 Sobic008G131700 Sobic008G131700 Sobic006G060200--Sobic008G131700 Sobic001G233400 Sobic001G233400 Sobic006G060200--Sobic001G233400 Sobic006G060200--Sobic005G036600 Sobic003G137100 Sobic003G137100 Sobic006G060200--Sobic003G137100 Sobic001G495300 Sobic001G495300 Sobic006G060200--Sobic001G495300 Sobic005G084000 Sobic005G084000 Sobic006G060200--Sobic005G084000 Sobic002G104000--Sobic001G217700 Sobic002G104000--Sobic003G110700 Sobic004G315800 Sobic004G315800 Sobic002G104000--Sobic004G315800 Sobic003G114100 Sobic003G114100 Sobic002G104000--Sobic003G114100 Sobic004G186200 Sobic004G186200 Sobic002G104000--Sobic004G186200 Sobic005G036100 Sobic005G036100 Sobic002G104000--Sobic005G036100 Sobic002G104000--Sobic008G131700 Sobic002G104000--Sobic002G215000 Sobic004G183300 Sobic004G183300 Sobic002G104000--Sobic004G183300 Sobic006G249050--Sobic005G036600 Sobic006G249050--Sobic001G217700 Sobic002G000700 Sobic002G000700 Sobic006G249050--Sobic002G000700 Sobic004G001300 Sobic004G001300 Sobic006G249050--Sobic004G001300 Sobic007G204900 Sobic007G204900 Sobic006G249050--Sobic007G204900 Sobic007G213700 Sobic007G213700 Sobic006G249050--Sobic007G213700 Sobic007G052900 Sobic007G052900 Sobic006G249050--Sobic007G052900 Sobic008G183200 Sobic008G183200 Sobic006G249050--Sobic008G183200 Sobic004G122200 Sobic004G122200 Sobic006G249050--Sobic004G122200 Sobic002G376700--Sobic001G217700 Sobic001G053900 Sobic001G053900 Sobic002G376700--Sobic001G053900 Sobic005G002600 Sobic005G002600 Sobic002G376700--Sobic005G002600 Sobic001G465100 Sobic001G465100 Sobic002G376700--Sobic001G465100 Sobic003G320600 Sobic003G320600 Sobic002G376700--Sobic003G320600 Sobic010G214000 Sobic010G214000 Sobic002G376700--Sobic010G214000 Sobic002G376700--Sobic010G246600 Sobic004G113800 Sobic004G113800 Sobic002G376700--Sobic004G113800 Sobic001G291200 Sobic001G291200 Sobic002G376700--Sobic001G291200 Sobic003G305000 Sobic003G305000 Sobic003G110700--Sobic003G305000 Sobic008G062500 Sobic008G062500 Sobic003G110700--Sobic008G062500 Sobic003G110700--Sobic003G137100 Sobic002G114700 Sobic002G114700 Sobic003G110700--Sobic002G114700 Sobic009G055800 Sobic009G055800 Sobic003G110700--Sobic009G055800 Sobic003G110700--Sobic008G183200 Sobic003G110700--Sobic004G001300 Sobic003G110700--Sobic002G104000 Sobic003G110700--Sobic004G186200 Sobic001G269300--Sobic006G060200 Sobic006G180432 Sobic006G180432 Sobic001G269300--Sobic006G180432 Sobic001G269300--Sobic005G036600 Sobic002G209600 Sobic002G209600 Sobic001G269300--Sobic002G209600 Sobic003G201750 Sobic003G201750 Sobic001G269300--Sobic003G201750 Sobic001G269300--Sobic007G052900 Sobic004G143400 Sobic004G143400 Sobic001G269300--Sobic004G143400 Sobic001G269300--Sobic008G131700 Sobic001G269300--Sobic004G315800 Sobic010G164200 Sobic010G164200 Sobic006G102400--Sobic010G164200 Sobic006G102400--Sobic008G183200 Sobic006G102400--Sobic004G122200 Sobic010G241300 Sobic010G241300 Sobic006G102400--Sobic010G241300 Sobic006G102400--Sobic001G217700 Sobic006G051300 Sobic006G051300 Sobic006G102400--Sobic006G051300 Sobic006G102400--Sobic006G249050 Sobic003G052300 Sobic003G052300 Sobic006G102400--Sobic003G052300 Sobic003G397200 Sobic003G397200 Sobic006G102400--Sobic003G397200 Sobic001G118100 Sobic001G118100 Sobic005G036600--Sobic001G118100 Sobic005G036600--Sobic001G269300 Sobic005G036600--Sobic007G052900 Sobic005G036600--Sobic006G060200 Sobic005G036600--Sobic006G180432 Sobic005G036600--Sobic006G249050 Sobic004G065650 Sobic004G065650 Sobic005G036600--Sobic004G065650 Sobic005G036600--Sobic001G217700 Sobic009G212700 Sobic009G212700 Sobic005G036600--Sobic009G212700 Sobic006G273000 Sobic006G273000 Sobic010G246600--Sobic006G273000 Sobic001G093600 Sobic001G093600 Sobic010G246600--Sobic001G093600 Sobic001G452700 Sobic001G452700 Sobic010G246600--Sobic001G452700 Sobic001G275200 Sobic001G275200 Sobic010G246600--Sobic001G275200 Sobic010G052500 Sobic010G052500 Sobic010G246600--Sobic010G052500 Sobic010G246600--Sobic001G217700 Sobic007G179750 Sobic007G179750 Sobic010G246600--Sobic007G179750 Sobic003G284300 Sobic003G284300 Sobic010G246600--Sobic003G284300 Sobic004G096300 Sobic004G096300 Sobic010G246600--Sobic004G096300
Octagon: transcription factors


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