Gene annotation
Transcriptome id Sobic.010G246600.1
Synonym XTH22, Sb10g028570, TCH4
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
glycosyl hydrolases family 16, putative, expressed
UniProt C5Z8T4
Pfam PF06955 PF00722
Panther DB PTHR31062 PTHR31062:SF47
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016762; xyloglucan:xyloglucosyl transferase activity GO:0006073cellular glucan metabolic process GO:0005618cell wall GO:0005975carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G57560 : Xyloglucan endotransglucosylase/hydrolase family protein
RAP-DB (Rice) LOC_Os06g48180.1 : glycosyl hydrolases family 16, putative, expressed
MaizeGDB (Corn) Zm00025a018309
Brachypodium KQK17338 , KQJ84411 , KQJ84412 , KQK17340
Barley HORVU4Hr1G028720.1 , HORVU7Hr1G098440.1 , HORVU7Hr1G098440.2 , HORVU7Hr1G098440.3 , HORVU7Hr1G098440.4 , HORVU7Hr1G098440.5 , HORVU7Hr1G098440.6 , HORVU7Hr1G098370.2 , HORVU7Hr1G098370.3 , HORVU7Hr1G098370.1 , HORVU7Hr1G098370.4 , HORVU4Hr1G085940.5 , HORVU4Hr1G085940.1 , HORVU4Hr1G085940.2
Wheat TraesCS7B02G327400 , TraesCSU02G175000 , TraesCS7B02G327700 , TraesCS7A02G427600 , TraesCS7D02G419200 , TraesCS7A02G427100 , TraesCS7D02G419400 , TraesCS4D02G142800 , TraesCS4D02G142800 , TraesCS7A02G427300 , TraesCS4A02G172600 , TraesCS7D02G419900
Populus -


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cDNA sequences
Sobic.010G246600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G273000 AT hook motif domain containing protein, expressed -
2 Sobic.001G093600 - -
3 Sobic.001G452700 serine/threonine-protein kinase receptor precursor, putative, expressed -
4 Sobic.001G275200 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
5 Sobic.010G052500 ZOS6-01 - C2H2 zinc finger protein, expressed -
6 Sobic.001G217700 possible lysine decarboxylase domain containing protein, expressed -
7 Sobic.007G179750 - -
8 Sobic.003G284300 expressed protein -
9 Sobic.004G096300 protein phosphatase 2C, putative, expressed -
10 Sobic.001G005500 plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed -
11 Sobic.001G225500 expressed protein -
12 Sobic.009G213400 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
13 Sobic.005G203900 OsGrx_C17 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
14 Sobic.002G376700 EF hand family protein, putative -
15 Sobic.003G178700 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
16 Sobic.008G101500 powdery mildew resistance protein PM3b, putative, expressed -
17 Sobic.004G096100 expressed protein -
18 Sobic.009G010700 expressed protein -
19 Sobic.001G019300 WD40-like Beta Propeller Repeat family protein, expressed -
20 Sobic.003G163500 Electron carrierprotein disulfide oxidoreductase (At)(PubMedID : 27208977)@expressed protein K03676: grxC, GLRX, glutaredoxin 3


Gene co-expression network
sample Sobic010G246600 Sobic010G246600 Sobic006G273000 Sobic006G273000 Sobic010G246600--Sobic006G273000 Sobic001G093600 Sobic001G093600 Sobic010G246600--Sobic001G093600 Sobic001G452700 Sobic001G452700 Sobic010G246600--Sobic001G452700 Sobic001G275200 Sobic001G275200 Sobic010G246600--Sobic001G275200 Sobic010G052500 Sobic010G052500 Sobic010G246600--Sobic010G052500 Sobic001G217700 Sobic001G217700 Sobic010G246600--Sobic001G217700 Sobic007G179750 Sobic007G179750 Sobic010G246600--Sobic007G179750 Sobic003G284300 Sobic003G284300 Sobic010G246600--Sobic003G284300 Sobic004G096300 Sobic004G096300 Sobic010G246600--Sobic004G096300 Sobic006G273000--Sobic001G275200 Sobic006G273000--Sobic001G093600 Sobic010G245100 Sobic010G245100 Sobic006G273000--Sobic010G245100 Sobic006G273000--Sobic003G284300 Sobic001G005500 Sobic001G005500 Sobic006G273000--Sobic001G005500 Sobic009G213400 Sobic009G213400 Sobic006G273000--Sobic009G213400 Sobic006G273000--Sobic010G246600 Sobic006G273000--Sobic010G052500 Sobic006G273000--Sobic007G179750 Sobic003G107300 Sobic003G107300 Sobic001G093600--Sobic003G107300 Sobic001G093600--Sobic006G273000 Sobic001G093600--Sobic001G005500 Sobic001G093600--Sobic001G275200 Sobic003G255100 Sobic003G255100 Sobic001G093600--Sobic003G255100 Sobic001G093600--Sobic007G179750 Sobic001G093600--Sobic003G284300 Sobic007G191900 Sobic007G191900 Sobic001G093600--Sobic007G191900 Sobic001G321600 Sobic001G321600 Sobic001G093600--Sobic001G321600 Sobic001G452700--Sobic001G093600 Sobic001G452700--Sobic003G255100 Sobic001G452700--Sobic010G246600 Sobic005G089000 Sobic005G089000 Sobic001G452700--Sobic005G089000 Sobic001G452700--Sobic001G005500 Sobic001G452700--Sobic007G191900 Sobic004G096100 Sobic004G096100 Sobic001G452700--Sobic004G096100 Sobic001G452700--Sobic007G179750 Sobic008G073400 Sobic008G073400 Sobic001G452700--Sobic008G073400 Sobic001G275200--Sobic006G273000 Sobic003G088800 Sobic003G088800 Sobic001G275200--Sobic003G088800 Sobic001G275200--Sobic001G093600 Sobic001G310800 Sobic001G310800 Sobic001G275200--Sobic001G310800 Sobic001G275200--Sobic001G005500 Sobic005G203900 Sobic005G203900 Sobic001G275200--Sobic005G203900 Sobic001G019300 Sobic001G019300 Sobic001G275200--Sobic001G019300 Sobic001G435500 Sobic001G435500 Sobic001G275200--Sobic001G435500 Sobic005G055900 Sobic005G055900 Sobic001G275200--Sobic005G055900 Sobic003G222300 Sobic003G222300 Sobic010G052500--Sobic003G222300 Sobic003G114100 Sobic003G114100 Sobic010G052500--Sobic003G114100 Sobic010G052500--Sobic006G273000 Sobic010G052500--Sobic009G213400 Sobic010G052500--Sobic001G005500 Sobic010G052500--Sobic010G246600 Sobic010G052500--Sobic001G275200 Sobic010G052500--Sobic007G191900 Sobic010G052500--Sobic010G245100 Sobic006G060200 Sobic006G060200 Sobic001G217700--Sobic006G060200 Sobic002G104000 Sobic002G104000 Sobic001G217700--Sobic002G104000 Sobic006G249050 Sobic006G249050 Sobic001G217700--Sobic006G249050 Sobic002G376700 Sobic002G376700 Sobic001G217700--Sobic002G376700 Sobic003G110700 Sobic003G110700 Sobic001G217700--Sobic003G110700 Sobic001G269300 Sobic001G269300 Sobic001G217700--Sobic001G269300 Sobic006G102400 Sobic006G102400 Sobic001G217700--Sobic006G102400 Sobic005G036600 Sobic005G036600 Sobic001G217700--Sobic005G036600 Sobic001G217700--Sobic010G246600 Sobic007G179750--Sobic001G093600 Sobic007G179750--Sobic006G273000 Sobic007G179750--Sobic003G107300 Sobic007G014600 Sobic007G014600 Sobic007G179750--Sobic007G014600 Sobic007G179750--Sobic001G005500 Sobic008G101500 Sobic008G101500 Sobic007G179750--Sobic008G101500 Sobic007G179750--Sobic010G246600 Sobic007G179750--Sobic007G191900 Sobic008G152200 Sobic008G152200 Sobic007G179750--Sobic008G152200 Sobic009G038200 Sobic009G038200 Sobic003G284300--Sobic009G038200 Sobic003G284300--Sobic006G273000 Sobic003G284300--Sobic001G005500 Sobic003G284300--Sobic001G321600 Sobic003G284300--Sobic001G093600 Sobic003G284300--Sobic001G019300 Sobic006G197800 Sobic006G197800 Sobic003G284300--Sobic006G197800 Sobic005G063900 Sobic005G063900 Sobic003G284300--Sobic005G063900 Sobic003G284300--Sobic007G014600 Sobic010G172200 Sobic010G172200 Sobic004G096300--Sobic010G172200 Sobic001G293800 Sobic001G293800 Sobic004G096300--Sobic001G293800 Sobic001G377000 Sobic001G377000 Sobic004G096300--Sobic001G377000 Sobic004G096300--Sobic009G213400 Sobic003G264901 Sobic003G264901 Sobic004G096300--Sobic003G264901 Sobic006G053700 Sobic006G053700 Sobic004G096300--Sobic006G053700 Sobic001G053900 Sobic001G053900 Sobic004G096300--Sobic001G053900 Sobic004G096300--Sobic007G014600 Sobic004G096300--Sobic008G152200
Octagon: transcription factors


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