Gene annotation
Transcriptome id Sobic.003G178700.1
Synonym G2, POP1, CUT1, CER6, Sb03g023131, KCS6
Functional annotation 3-ketoacyl-CoA synthase, putative, expressed
UniProt C5XM86
Pfam PF08541 PF08392
Panther DB PTHR31561 PTHR31561:SF9
NCBI CDD -
KEGG Orthology K15397; 3-ketoacyl-CoA synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process GO:0016020membrane GO:0006633fatty acid biosynthetic process


Orthologs (automatic annotation)
TAIR AT1G25450 : 3-ketoacyl-CoA synthase 5
RAP-DB (Rice) LOC_Os01g34560.1 : 3-ketoacyl-CoA synthase, putative, expressed
MaizeGDB (Corn) Zm00025a020257 , Zm00025a042702 , Zm00025a013566 , Zm00025a029505 , Zm00025a028878 , Zm00025a032652 , Zm00025a036399 , Zm00025a021922 , Zm00025a050385 , Zm00025a028880
Brachypodium KQK04750 , KQK18680 , KQK18679 , KQK16807 , KQK08195
Barley HORVU6Hr1G073300.1 , HORVU6Hr1G004830.1 , HORVU4Hr1G067340.4 , HORVU3Hr1G054510.1 , HORVU7Hr1G079910.1 , HORVU4Hr1G072960.1 , HORVU4Hr1G067340.2 , HORVU4Hr1G067340.3 , HORVU4Hr1G067340.1 , HORVU1Hr1G090730.1 , HORVU7Hr1G006910.1 , HORVU7Hr1G006910.2 , HORVU3Hr1G069880.1 , HORVU3Hr1G069880.2 , HORVU3Hr1G069880.3
Wheat TraesCS7B02G449000 , TraesCS4A02G065300 , TraesCS3B02G313800
Populus -


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cDNA sequences
Sobic.003G178700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G015300 amino acid permease family protein, putative, expressed -
2 Sobic.003G163500 Electron carrierprotein disulfide oxidoreductase (At)(PubMedID : 27208977)@expressed protein K03676: grxC, GLRX, glutaredoxin 3
3 Sobic.005G046500 protein kinase family protein, putative, expressed -
4 Sobic.009G002500 polygalacturonase inhibitor precursor, putative, expressed -
5 Sobic.008G101500 powdery mildew resistance protein PM3b, putative, expressed -
6 Sobic.008G118000 Glutaredoxin family protein (At)(PubMedID : 27208977)@OsGrx_C11 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
7 Sobic.005G076000 expressed protein -
8 Sobic.007G129100 - -
9 Sobic.009G213400 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
10 Sobic.001G217700 possible lysine decarboxylase domain containing protein, expressed -
11 Sobic.001G015300 expressed protein -
12 Sobic.008G105900 - -
13 Sobic.006G214400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
14 Sobic.010G246600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed -
15 Sobic.006G273000 AT hook motif domain containing protein, expressed -
16 Sobic.007G179750 - -
17 Sobic.002G376700 EF hand family protein, putative -
18 Sobic.010G244500 expressed protein -
19 Sobic.003G006800 expressed protein -
20 Sobic.001G433200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@beta-galactosidase precursor, putative, expressed -


Gene co-expression network
sample Sobic003G178700 Sobic003G178700 Sobic008G015300 Sobic008G015300 Sobic003G178700--Sobic008G015300 Sobic003G163500 Sobic003G163500 Sobic003G178700--Sobic003G163500 Sobic005G046500 Sobic005G046500 Sobic003G178700--Sobic005G046500 Sobic009G002500 Sobic009G002500 Sobic003G178700--Sobic009G002500 Sobic008G101500 Sobic008G101500 Sobic003G178700--Sobic008G101500 Sobic008G118000 Sobic008G118000 Sobic003G178700--Sobic008G118000 Sobic005G076000 Sobic005G076000 Sobic003G178700--Sobic005G076000 Sobic007G129100 Sobic007G129100 Sobic003G178700--Sobic007G129100 Sobic009G213400 Sobic009G213400 Sobic003G178700--Sobic009G213400 Sobic008G015300--Sobic003G178700 Sobic002G074300 Sobic002G074300 Sobic008G015300--Sobic002G074300 Sobic010G270900 Sobic010G270900 Sobic008G015300--Sobic010G270900 Sobic008G015300--Sobic005G046500 Sobic001G015300 Sobic001G015300 Sobic008G015300--Sobic001G015300 Sobic003G089600 Sobic003G089600 Sobic008G015300--Sobic003G089600 Sobic006G241200 Sobic006G241200 Sobic008G015300--Sobic006G241200 Sobic006G051100 Sobic006G051100 Sobic008G015300--Sobic006G051100 Sobic004G011566 Sobic004G011566 Sobic008G015300--Sobic004G011566 Sobic003G163500--Sobic003G178700 Sobic001G169200 Sobic001G169200 Sobic003G163500--Sobic001G169200 Sobic003G163700 Sobic003G163700 Sobic003G163500--Sobic003G163700 Sobic009G010700 Sobic009G010700 Sobic003G163500--Sobic009G010700 Sobic010G214600 Sobic010G214600 Sobic003G163500--Sobic010G214600 Sobic010G194001 Sobic010G194001 Sobic003G163500--Sobic010G194001 Sobic005G111200 Sobic005G111200 Sobic003G163500--Sobic005G111200 Sobic010G248301 Sobic010G248301 Sobic003G163500--Sobic010G248301 Sobic010G246600 Sobic010G246600 Sobic003G163500--Sobic010G246600 Sobic005G046500--Sobic003G178700 Sobic009G085400 Sobic009G085400 Sobic005G046500--Sobic009G085400 Sobic009G004700 Sobic009G004700 Sobic005G046500--Sobic009G004700 Sobic006G214400 Sobic006G214400 Sobic005G046500--Sobic006G214400 Sobic006G180432 Sobic006G180432 Sobic005G046500--Sobic006G180432 Sobic009G045700 Sobic009G045700 Sobic005G046500--Sobic009G045700 Sobic001G497200 Sobic001G497200 Sobic005G046500--Sobic001G497200 Sobic009G078500 Sobic009G078500 Sobic005G046500--Sobic009G078500 Sobic005G046500--Sobic009G002500 Sobic008G105500 Sobic008G105500 Sobic009G002500--Sobic008G105500 Sobic004G020401 Sobic004G020401 Sobic009G002500--Sobic004G020401 Sobic009G109450 Sobic009G109450 Sobic009G002500--Sobic009G109450 Sobic003G357500 Sobic003G357500 Sobic009G002500--Sobic003G357500 Sobic009G197200 Sobic009G197200 Sobic009G002500--Sobic009G197200 Sobic006G196000 Sobic006G196000 Sobic009G002500--Sobic006G196000 Sobic009G002500--Sobic009G078500 Sobic006G020500 Sobic006G020500 Sobic009G002500--Sobic006G020500 Sobic009G110366 Sobic009G110366 Sobic009G002500--Sobic009G110366 Sobic001G076200 Sobic001G076200 Sobic008G101500--Sobic001G076200 Sobic004G249500 Sobic004G249500 Sobic008G101500--Sobic004G249500 Sobic005G127000 Sobic005G127000 Sobic008G101500--Sobic005G127000 Sobic003G114100 Sobic003G114100 Sobic008G101500--Sobic003G114100 Sobic007G179750 Sobic007G179750 Sobic008G101500--Sobic007G179750 Sobic008G101500--Sobic003G178700 Sobic001G093600 Sobic001G093600 Sobic008G101500--Sobic001G093600 Sobic001G217700 Sobic001G217700 Sobic008G101500--Sobic001G217700 Sobic008G101500--Sobic008G118000 Sobic008G118000--Sobic006G214400 Sobic008G118000--Sobic008G101500 Sobic008G118000--Sobic003G178700 Sobic001G491200 Sobic001G491200 Sobic008G118000--Sobic001G491200 Sobic008G118000--Sobic001G217700 Sobic002G114700 Sobic002G114700 Sobic008G118000--Sobic002G114700 Sobic007G076700 Sobic007G076700 Sobic008G118000--Sobic007G076700 Sobic008G118000--Sobic009G085400 Sobic004G315800 Sobic004G315800 Sobic008G118000--Sobic004G315800 Sobic005G076000--Sobic003G178700 Sobic008G105900 Sobic008G105900 Sobic005G076000--Sobic008G105900 Sobic003G167632 Sobic003G167632 Sobic005G076000--Sobic003G167632 Sobic003G167800 Sobic003G167800 Sobic005G076000--Sobic003G167800 Sobic001G269300 Sobic001G269300 Sobic005G076000--Sobic001G269300 Sobic005G076000--Sobic006G180432 Sobic006G060200 Sobic006G060200 Sobic005G076000--Sobic006G060200 Sobic005G076000--Sobic004G315800 Sobic005G076000--Sobic001G217700 Sobic007G129100--Sobic001G015300 Sobic002G376900 Sobic002G376900 Sobic007G129100--Sobic002G376900 Sobic006G249000 Sobic006G249000 Sobic007G129100--Sobic006G249000 Sobic010G270300 Sobic010G270300 Sobic007G129100--Sobic010G270300 Sobic007G129100--Sobic009G078500 Sobic002G051300 Sobic002G051300 Sobic007G129100--Sobic002G051300 Sobic005G130100 Sobic005G130100 Sobic007G129100--Sobic005G130100 Sobic001G363100 Sobic001G363100 Sobic007G129100--Sobic001G363100 Sobic002G376800 Sobic002G376800 Sobic007G129100--Sobic002G376800 Sobic010G245100 Sobic010G245100 Sobic009G213400--Sobic010G245100 Sobic001G377000 Sobic001G377000 Sobic009G213400--Sobic001G377000 Sobic004G096300 Sobic004G096300 Sobic009G213400--Sobic004G096300 Sobic006G273000 Sobic006G273000 Sobic009G213400--Sobic006G273000 Sobic003G222300 Sobic003G222300 Sobic009G213400--Sobic003G222300 Sobic001G191200 Sobic001G191200 Sobic009G213400--Sobic001G191200 Sobic006G053700 Sobic006G053700 Sobic009G213400--Sobic006G053700 Sobic009G213400--Sobic001G093600 Sobic010G052500 Sobic010G052500 Sobic009G213400--Sobic010G052500
Octagon: transcription factors


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