Gene annotation
Transcriptome id Sobic.002G376700.1
Synonym
Functional annotation EF hand family protein, putative
UniProt A0A1B6QFN1
Pfam PF13202
Panther DB PTHR10891 PTHR10891:SF597
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT1G18530 : EF hand calcium-binding protein family
RAP-DB (Rice) LOC_Os03g27790.1 : EF hand family protein, putative
MaizeGDB (Corn) Zm00025a015226
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G217700 possible lysine decarboxylase domain containing protein, expressed -
2 Sobic.001G053900 nodulin, putative, expressed -
3 Sobic.005G002600 - -
4 Sobic.001G465100 hydrolase, alpha/beta fold family domain containing protein, expressed -
5 Sobic.003G320600 membrane protein, putative, expressed -
6 Sobic.010G214000 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
7 Sobic.010G246600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed -
8 Sobic.004G113800 CAPIP1, putative, expressed K14496: abscisic acid receptor PYR/PYL family
9 Sobic.001G291200 - -
10 Sobic.006G273000 AT hook motif domain containing protein, expressed -
11 Sobic.003G178700 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
12 Sobic.007G052900 acetyltransferase, GNAT family, putative, expressed -
13 Sobic.001G225500 expressed protein -
14 Sobic.003G305000 Unnamed(PubMedID : 24676859)@CIN-like (ClassII) Subclade 9 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
15 Sobic.010G052500 ZOS6-01 - C2H2 zinc finger protein, expressed -
16 Sobic.001G240800 tyrosine protein kinase domain containing protein, putative, expressed -
17 Sobic.007G179750 - -
18 Sobic.008G183200 LOL3, putative, expressed -
19 Sobic.008G152200 DC1 domain-containing protein, putative, expressed -
20 Sobic.007G130100 armadillo/beta-catenin repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic002G376700 Sobic002G376700 Sobic001G217700 Sobic001G217700 Sobic002G376700--Sobic001G217700 Sobic001G053900 Sobic001G053900 Sobic002G376700--Sobic001G053900 Sobic005G002600 Sobic005G002600 Sobic002G376700--Sobic005G002600 Sobic001G465100 Sobic001G465100 Sobic002G376700--Sobic001G465100 Sobic003G320600 Sobic003G320600 Sobic002G376700--Sobic003G320600 Sobic010G214000 Sobic010G214000 Sobic002G376700--Sobic010G214000 Sobic010G246600 Sobic010G246600 Sobic002G376700--Sobic010G246600 Sobic004G113800 Sobic004G113800 Sobic002G376700--Sobic004G113800 Sobic001G291200 Sobic001G291200 Sobic002G376700--Sobic001G291200 Sobic006G060200 Sobic006G060200 Sobic001G217700--Sobic006G060200 Sobic002G104000 Sobic002G104000 Sobic001G217700--Sobic002G104000 Sobic006G249050 Sobic006G249050 Sobic001G217700--Sobic006G249050 Sobic001G217700--Sobic002G376700 Sobic003G110700 Sobic003G110700 Sobic001G217700--Sobic003G110700 Sobic001G269300 Sobic001G269300 Sobic001G217700--Sobic001G269300 Sobic006G102400 Sobic006G102400 Sobic001G217700--Sobic006G102400 Sobic005G036600 Sobic005G036600 Sobic001G217700--Sobic005G036600 Sobic001G217700--Sobic010G246600 Sobic004G096300 Sobic004G096300 Sobic001G053900--Sobic004G096300 Sobic001G053900--Sobic002G376700 Sobic001G053900--Sobic010G214000 Sobic001G053900--Sobic001G291200 Sobic003G264901 Sobic003G264901 Sobic001G053900--Sobic003G264901 Sobic001G053900--Sobic004G113800 Sobic006G172900 Sobic006G172900 Sobic001G053900--Sobic006G172900 Sobic008G152200 Sobic008G152200 Sobic001G053900--Sobic008G152200 Sobic007G071000 Sobic007G071000 Sobic001G053900--Sobic007G071000 Sobic007G052900 Sobic007G052900 Sobic005G002600--Sobic007G052900 Sobic010G280100 Sobic010G280100 Sobic005G002600--Sobic010G280100 Sobic009G198900 Sobic009G198900 Sobic005G002600--Sobic009G198900 Sobic005G002600--Sobic002G376700 Sobic003G324000 Sobic003G324000 Sobic005G002600--Sobic003G324000 Sobic010G056200 Sobic010G056200 Sobic005G002600--Sobic010G056200 Sobic006G180432 Sobic006G180432 Sobic005G002600--Sobic006G180432 Sobic004G083700 Sobic004G083700 Sobic005G002600--Sobic004G083700 Sobic007G130100 Sobic007G130100 Sobic005G002600--Sobic007G130100 Sobic008G042500 Sobic008G042500 Sobic001G465100--Sobic008G042500 Sobic003G391100 Sobic003G391100 Sobic001G465100--Sobic003G391100 Sobic003G123300 Sobic003G123300 Sobic001G465100--Sobic003G123300 Sobic001G078900 Sobic001G078900 Sobic001G465100--Sobic001G078900 Sobic004G325900 Sobic004G325900 Sobic001G465100--Sobic004G325900 Sobic001G465100--Sobic002G376700 Sobic006G241350 Sobic006G241350 Sobic001G465100--Sobic006G241350 Sobic001G465100--Sobic004G096300 Sobic001G465100--Sobic001G053900 Sobic006G051100 Sobic006G051100 Sobic003G320600--Sobic006G051100 Sobic003G320600--Sobic002G376700 Sobic001G225400 Sobic001G225400 Sobic003G320600--Sobic001G225400 Sobic001G225500 Sobic001G225500 Sobic003G320600--Sobic001G225500 Sobic003G013600 Sobic003G013600 Sobic003G320600--Sobic003G013600 Sobic003G320600--Sobic003G123300 Sobic003G320600--Sobic001G465100 Sobic003G320600--Sobic006G241350 Sobic001G191200 Sobic001G191200 Sobic003G320600--Sobic001G191200 Sobic003G108600 Sobic003G108600 Sobic010G214000--Sobic003G108600 Sobic009G189000 Sobic009G189000 Sobic010G214000--Sobic009G189000 Sobic001G102300 Sobic001G102300 Sobic010G214000--Sobic001G102300 Sobic006G135100 Sobic006G135100 Sobic010G214000--Sobic006G135100 Sobic010G214000--Sobic001G053900 Sobic003G068800 Sobic003G068800 Sobic010G214000--Sobic003G068800 Sobic006G258700 Sobic006G258700 Sobic010G214000--Sobic006G258700 Sobic001G351400 Sobic001G351400 Sobic010G214000--Sobic001G351400 Sobic003G292600 Sobic003G292600 Sobic010G214000--Sobic003G292600 Sobic006G273000 Sobic006G273000 Sobic010G246600--Sobic006G273000 Sobic001G093600 Sobic001G093600 Sobic010G246600--Sobic001G093600 Sobic001G452700 Sobic001G452700 Sobic010G246600--Sobic001G452700 Sobic001G275200 Sobic001G275200 Sobic010G246600--Sobic001G275200 Sobic010G052500 Sobic010G052500 Sobic010G246600--Sobic010G052500 Sobic010G246600--Sobic001G217700 Sobic007G179750 Sobic007G179750 Sobic010G246600--Sobic007G179750 Sobic003G284300 Sobic003G284300 Sobic010G246600--Sobic003G284300 Sobic010G246600--Sobic004G096300 Sobic004G113800--Sobic010G056200 Sobic004G113800--Sobic007G052900 Sobic009G140500 Sobic009G140500 Sobic004G113800--Sobic009G140500 Sobic001G368400 Sobic001G368400 Sobic004G113800--Sobic001G368400 Sobic001G118100 Sobic001G118100 Sobic004G113800--Sobic001G118100 Sobic009G034200 Sobic009G034200 Sobic004G113800--Sobic009G034200 Sobic004G241500 Sobic004G241500 Sobic004G113800--Sobic004G241500 Sobic004G174400 Sobic004G174400 Sobic004G113800--Sobic004G174400 Sobic004G113800--Sobic003G324000 Sobic001G291200--Sobic001G053900 Sobic001G240800 Sobic001G240800 Sobic001G291200--Sobic001G240800 Sobic006G053700 Sobic006G053700 Sobic001G291200--Sobic006G053700 Sobic001G291200--Sobic002G376700 Sobic001G291200--Sobic004G096300 Sobic001G291200--Sobic003G284300 Sobic001G291200--Sobic003G108600 Sobic001G291200--Sobic003G391100 Sobic010G214600 Sobic010G214600 Sobic001G291200--Sobic010G214600
Octagon: transcription factors


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