Gene annotation
Transcriptome id Sobic.001G225500.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6QKD4
Pfam -
Panther DB PTHR34538 PTHR34538:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os10g32930.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G225400 expressed protein -
2 Sobic.001G377000 auxin-repressed protein, putative, expressed -
3 Sobic.001G191200 a marker of bud dormancy(PubMedID : 16443694)@auxin-repressed protein, putative, expressed -
4 Sobic.003G406700 expressed protein -
5 Sobic.010G172200 cytochrome P450, putative, expressed -
6 Sobic.010G246600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed -
7 Sobic.009G213400 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
8 Sobic.007G179750 - -
9 Sobic.003G320600 membrane protein, putative, expressed -
10 Sobic.008G101500 powdery mildew resistance protein PM3b, putative, expressed -
11 Sobic.002G095900 - -
12 Sobic.006G279800 expressed protein -
13 Sobic.004G096300 protein phosphatase 2C, putative, expressed -
14 Sobic.003G013600 expressed protein -
15 Sobic.001G093600 - -
16 Sobic.002G376700 EF hand family protein, putative -
17 Sobic.003G264901 - -
18 Sobic.006G051100 expressed protein -
19 Sobic.001G293800 chloroplast beta-amylase(PubMedID : 26465154)@chloroplast beta-amylase(PubMedID : 26465154)@beta-amylase, putative, expressed K01177: beta-amylase
20 Sobic.003G178700 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase


Gene co-expression network
sample Sobic001G225500 Sobic001G225500 Sobic001G225400 Sobic001G225400 Sobic001G225500--Sobic001G225400 Sobic001G377000 Sobic001G377000 Sobic001G225500--Sobic001G377000 Sobic001G191200 Sobic001G191200 Sobic001G225500--Sobic001G191200 Sobic003G406700 Sobic003G406700 Sobic001G225500--Sobic003G406700 Sobic010G172200 Sobic010G172200 Sobic001G225500--Sobic010G172200 Sobic010G246600 Sobic010G246600 Sobic001G225500--Sobic010G246600 Sobic009G213400 Sobic009G213400 Sobic001G225500--Sobic009G213400 Sobic007G179750 Sobic007G179750 Sobic001G225500--Sobic007G179750 Sobic003G320600 Sobic003G320600 Sobic001G225500--Sobic003G320600 Sobic001G225400--Sobic001G225500 Sobic001G225400--Sobic001G377000 Sobic001G293800 Sobic001G293800 Sobic001G225400--Sobic001G293800 Sobic003G013600 Sobic003G013600 Sobic001G225400--Sobic003G013600 Sobic001G032100 Sobic001G032100 Sobic001G225400--Sobic001G032100 Sobic001G225400--Sobic003G320600 Sobic001G225400--Sobic010G172200 Sobic001G465100 Sobic001G465100 Sobic001G225400--Sobic001G465100 Sobic007G148200 Sobic007G148200 Sobic001G225400--Sobic007G148200 Sobic001G377000--Sobic001G191200 Sobic001G377000--Sobic009G213400 Sobic004G096300 Sobic004G096300 Sobic001G377000--Sobic004G096300 Sobic001G377000--Sobic003G406700 Sobic001G377000--Sobic007G148200 Sobic001G377000--Sobic001G293800 Sobic007G071000 Sobic007G071000 Sobic001G377000--Sobic007G071000 Sobic001G377000--Sobic010G172200 Sobic003G264901 Sobic003G264901 Sobic001G377000--Sobic003G264901 Sobic001G191200--Sobic003G406700 Sobic001G078200 Sobic001G078200 Sobic001G191200--Sobic001G078200 Sobic009G154600 Sobic009G154600 Sobic001G191200--Sobic009G154600 Sobic001G191200--Sobic001G377000 Sobic001G191200--Sobic009G213400 Sobic005G085200 Sobic005G085200 Sobic001G191200--Sobic005G085200 Sobic003G107300 Sobic003G107300 Sobic001G191200--Sobic003G107300 Sobic001G423100 Sobic001G423100 Sobic001G191200--Sobic001G423100 Sobic001G191200--Sobic001G225500 Sobic003G406700--Sobic001G191200 Sobic003G406700--Sobic001G377000 Sobic003G406700--Sobic009G154600 Sobic003G406700--Sobic003G107300 Sobic003G406700--Sobic001G423100 Sobic003G406700--Sobic001G225500 Sobic006G279800 Sobic006G279800 Sobic003G406700--Sobic006G279800 Sobic001G031300 Sobic001G031300 Sobic003G406700--Sobic001G031300 Sobic002G331000 Sobic002G331000 Sobic003G406700--Sobic002G331000 Sobic010G172200--Sobic004G096300 Sobic010G172200--Sobic003G264901 Sobic006G053700 Sobic006G053700 Sobic010G172200--Sobic006G053700 Sobic010G172200--Sobic001G293800 Sobic010G172200--Sobic001G377000 Sobic010G172200--Sobic007G071000 Sobic010G172200--Sobic001G225500 Sobic007G014600 Sobic007G014600 Sobic010G172200--Sobic007G014600 Sobic008G152200 Sobic008G152200 Sobic010G172200--Sobic008G152200 Sobic006G273000 Sobic006G273000 Sobic010G246600--Sobic006G273000 Sobic001G093600 Sobic001G093600 Sobic010G246600--Sobic001G093600 Sobic001G452700 Sobic001G452700 Sobic010G246600--Sobic001G452700 Sobic001G275200 Sobic001G275200 Sobic010G246600--Sobic001G275200 Sobic010G052500 Sobic010G052500 Sobic010G246600--Sobic010G052500 Sobic001G217700 Sobic001G217700 Sobic010G246600--Sobic001G217700 Sobic010G246600--Sobic007G179750 Sobic003G284300 Sobic003G284300 Sobic010G246600--Sobic003G284300 Sobic010G246600--Sobic004G096300 Sobic010G245100 Sobic010G245100 Sobic009G213400--Sobic010G245100 Sobic009G213400--Sobic001G377000 Sobic009G213400--Sobic004G096300 Sobic009G213400--Sobic006G273000 Sobic003G222300 Sobic003G222300 Sobic009G213400--Sobic003G222300 Sobic009G213400--Sobic001G191200 Sobic009G213400--Sobic006G053700 Sobic009G213400--Sobic001G093600 Sobic009G213400--Sobic010G052500 Sobic007G179750--Sobic001G093600 Sobic007G179750--Sobic006G273000 Sobic007G179750--Sobic003G107300 Sobic007G179750--Sobic007G014600 Sobic001G005500 Sobic001G005500 Sobic007G179750--Sobic001G005500 Sobic008G101500 Sobic008G101500 Sobic007G179750--Sobic008G101500 Sobic007G179750--Sobic010G246600 Sobic007G191900 Sobic007G191900 Sobic007G179750--Sobic007G191900 Sobic007G179750--Sobic008G152200 Sobic006G051100 Sobic006G051100 Sobic003G320600--Sobic006G051100 Sobic002G376700 Sobic002G376700 Sobic003G320600--Sobic002G376700 Sobic003G320600--Sobic001G225400 Sobic003G320600--Sobic001G225500 Sobic003G320600--Sobic003G013600 Sobic003G123300 Sobic003G123300 Sobic003G320600--Sobic003G123300 Sobic003G320600--Sobic001G465100 Sobic006G241350 Sobic006G241350 Sobic003G320600--Sobic006G241350 Sobic003G320600--Sobic001G191200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.