Gene annotation
Transcriptome id Sobic.004G096300.1
Synonym Sb04g007930
Functional annotation protein phosphatase 2C, putative, expressed
UniProt C5XYG1
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF308
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology -
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT5G36250 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os02g13100.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a020163 , Zm00025a034549
Brachypodium KQJ94086
Barley HORVU6Hr1G039940.4 , HORVU6Hr1G039940.1 , HORVU6Hr1G039940.2
Wheat TraesCS6A02G187700 , TraesCS6D02G178400 , TraesCS6B02G216900
Populus -


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cDNA sequences
Sobic.004G096300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G172200 cytochrome P450, putative, expressed -
2 Sobic.001G293800 chloroplast beta-amylase(PubMedID : 26465154)@chloroplast beta-amylase(PubMedID : 26465154)@beta-amylase, putative, expressed K01177: beta-amylase
3 Sobic.001G377000 auxin-repressed protein, putative, expressed -
4 Sobic.009G213400 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
5 Sobic.003G264901 - -
6 Sobic.006G053700 ACT domain containing protein, expressed -
7 Sobic.001G053900 nodulin, putative, expressed -
8 Sobic.007G014600 transferase family protein, putative, expressed -
9 Sobic.008G152200 DC1 domain-containing protein, putative, expressed -
10 Sobic.007G071000 no apical meristem protein, putative, expressed -
11 Sobic.003G153800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein beta-fructofuranosidase (Os)(PubMedID : 27208977)@neutral/alkaline invertase, putative, expressed -
12 Sobic.006G273000 AT hook motif domain containing protein, expressed -
13 Sobic.001G511000 peptide transporter PTR3-A, putative, expressed -
14 Sobic.010G246600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed -
15 Sobic.008G042500 expressed protein -
16 Sobic.009G205600 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
17 Sobic.001G465100 hydrolase, alpha/beta fold family domain containing protein, expressed -
18 Sobic.003G408400 PCF-like (ClassI) Subclade 3 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
19 Sobic.003G284300 expressed protein -
20 Sobic.003G308700 BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1


Gene co-expression network
sample Sobic004G096300 Sobic004G096300 Sobic010G172200 Sobic010G172200 Sobic004G096300--Sobic010G172200 Sobic001G293800 Sobic001G293800 Sobic004G096300--Sobic001G293800 Sobic001G377000 Sobic001G377000 Sobic004G096300--Sobic001G377000 Sobic009G213400 Sobic009G213400 Sobic004G096300--Sobic009G213400 Sobic003G264901 Sobic003G264901 Sobic004G096300--Sobic003G264901 Sobic006G053700 Sobic006G053700 Sobic004G096300--Sobic006G053700 Sobic001G053900 Sobic001G053900 Sobic004G096300--Sobic001G053900 Sobic007G014600 Sobic007G014600 Sobic004G096300--Sobic007G014600 Sobic008G152200 Sobic008G152200 Sobic004G096300--Sobic008G152200 Sobic010G172200--Sobic004G096300 Sobic010G172200--Sobic003G264901 Sobic010G172200--Sobic006G053700 Sobic010G172200--Sobic001G293800 Sobic010G172200--Sobic001G377000 Sobic007G071000 Sobic007G071000 Sobic010G172200--Sobic007G071000 Sobic001G225500 Sobic001G225500 Sobic010G172200--Sobic001G225500 Sobic010G172200--Sobic007G014600 Sobic010G172200--Sobic008G152200 Sobic001G293800--Sobic004G096300 Sobic001G293800--Sobic003G264901 Sobic001G293800--Sobic001G377000 Sobic001G293800--Sobic010G172200 Sobic003G153800 Sobic003G153800 Sobic001G293800--Sobic003G153800 Sobic001G293800--Sobic007G071000 Sobic004G275200 Sobic004G275200 Sobic001G293800--Sobic004G275200 Sobic001G293800--Sobic006G053700 Sobic001G225400 Sobic001G225400 Sobic001G293800--Sobic001G225400 Sobic001G191200 Sobic001G191200 Sobic001G377000--Sobic001G191200 Sobic001G377000--Sobic009G213400 Sobic001G377000--Sobic004G096300 Sobic003G406700 Sobic003G406700 Sobic001G377000--Sobic003G406700 Sobic007G148200 Sobic007G148200 Sobic001G377000--Sobic007G148200 Sobic001G377000--Sobic001G293800 Sobic001G377000--Sobic007G071000 Sobic001G377000--Sobic010G172200 Sobic001G377000--Sobic003G264901 Sobic010G245100 Sobic010G245100 Sobic009G213400--Sobic010G245100 Sobic009G213400--Sobic001G377000 Sobic009G213400--Sobic004G096300 Sobic006G273000 Sobic006G273000 Sobic009G213400--Sobic006G273000 Sobic003G222300 Sobic003G222300 Sobic009G213400--Sobic003G222300 Sobic009G213400--Sobic001G191200 Sobic009G213400--Sobic006G053700 Sobic001G093600 Sobic001G093600 Sobic009G213400--Sobic001G093600 Sobic010G052500 Sobic010G052500 Sobic009G213400--Sobic010G052500 Sobic003G264901--Sobic004G096300 Sobic003G264901--Sobic010G172200 Sobic003G264901--Sobic001G293800 Sobic003G264901--Sobic006G053700 Sobic003G264901--Sobic007G071000 Sobic003G264901--Sobic001G377000 Sobic009G205600 Sobic009G205600 Sobic003G264901--Sobic009G205600 Sobic003G264901--Sobic003G153800 Sobic003G264901--Sobic001G053900 Sobic006G053700--Sobic004G096300 Sobic006G053700--Sobic010G172200 Sobic006G053700--Sobic007G014600 Sobic006G053700--Sobic009G213400 Sobic006G053700--Sobic003G264901 Sobic002G209100 Sobic002G209100 Sobic006G053700--Sobic002G209100 Sobic002G271600 Sobic002G271600 Sobic006G053700--Sobic002G271600 Sobic001G005500 Sobic001G005500 Sobic006G053700--Sobic001G005500 Sobic007G191900 Sobic007G191900 Sobic006G053700--Sobic007G191900 Sobic001G053900--Sobic004G096300 Sobic002G376700 Sobic002G376700 Sobic001G053900--Sobic002G376700 Sobic010G214000 Sobic010G214000 Sobic001G053900--Sobic010G214000 Sobic001G291200 Sobic001G291200 Sobic001G053900--Sobic001G291200 Sobic001G053900--Sobic003G264901 Sobic004G113800 Sobic004G113800 Sobic001G053900--Sobic004G113800 Sobic006G172900 Sobic006G172900 Sobic001G053900--Sobic006G172900 Sobic001G053900--Sobic008G152200 Sobic001G053900--Sobic007G071000 Sobic007G014600--Sobic002G271600 Sobic007G014600--Sobic004G096300 Sobic007G014600--Sobic006G053700 Sobic001G030500 Sobic001G030500 Sobic007G014600--Sobic001G030500 Sobic007G014600--Sobic002G209100 Sobic007G014600--Sobic009G205600 Sobic003G255100 Sobic003G255100 Sobic007G014600--Sobic003G255100 Sobic006G152500 Sobic006G152500 Sobic007G014600--Sobic006G152500 Sobic003G284300 Sobic003G284300 Sobic007G014600--Sobic003G284300 Sobic008G152200--Sobic007G071000 Sobic008G152200--Sobic004G096300 Sobic004G096100 Sobic004G096100 Sobic008G152200--Sobic004G096100 Sobic008G152200--Sobic007G014600 Sobic008G152200--Sobic009G205600 Sobic008G152200--Sobic001G377000 Sobic009G023401 Sobic009G023401 Sobic008G152200--Sobic009G023401 Sobic008G152200--Sobic003G264901 Sobic007G179750 Sobic007G179750 Sobic008G152200--Sobic007G179750
Octagon: transcription factors


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