Gene annotation
| Transcriptome id | Sobic.003G153800.1 |
|---|---|
| Synonym | Sb03g013420, |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) Protein beta-fructofuranosidase (Os) (PubMedID : 27208977) neutral/alkaline invertase, putative, expressed |
| UniProt | C5XJR5 |
| Pfam | PF12899 |
| Panther DB | PTHR31916 PTHR31916:SF14 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G56560 : Plant neutral invertase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g22900.1 : neutral/alkaline invertase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a056684 , Zm00025a036159 , Zm00025a024429 |
| Brachypodium | KQK21948 , KQK04222 |
| Barley | HORVU3Hr1G040640.9 , HORVU3Hr1G040640.8 , HORVU3Hr1G040640.7 , HORVU3Hr1G040640.6 , HORVU3Hr1G040640.5 , HORVU3Hr1G040640.4 , HORVU3Hr1G040640.3 , HORVU3Hr1G040640.2 , HORVU3Hr1G040640.1 , HORVU3Hr1G040640.11 , HORVU3Hr1G040640.13 , HORVU3Hr1G040640.12 , HORVU3Hr1G040640.10 |
| Wheat | TraesCS3D02G200800 , TraesCS3B02G232600 , TraesCS3A02G195400 |
| Populus | PNT05989 , PNT34370 , PNT34371 , PNT05990 |
JBrowse
| Sobic.003G153800 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.K020500 | coatomer subunit beta-1, putative, expressed | K17301: COPB1, coatomer subunit beta |
| 2 | Sobic.004G187300 | zinc finger protein, putative, expressed | - |
| 3 | Sobic.004G096300 | protein phosphatase 2C, putative, expressed | - |
| 4 | Sobic.001G293800 | chloroplast beta-amylase(PubMedID : 26465154)@chloroplast beta-amylase(PubMedID : 26465154)@beta-amylase, putative, expressed | K01177: beta-amylase |
| 5 | Sobic.009G205600 | anthocyanidin 5,3-O-glucosyltransferase, putative, expressed | - |
| 6 | Sobic.003G264901 | - | - |
| 7 | Sobic.007G071000 | no apical meristem protein, putative, expressed | - |
| 8 | Sobic.001G410450 | - | - |
| 9 | Sobic.006G152500 | - | - |
| 10 | Sobic.007G054100 | stress-induced protein, putative, expressed | - |
| 11 | Sobic.003G308700 | BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed | K14508: regulatory protein NPR1 |
| 12 | Sobic.007G014600 | transferase family protein, putative, expressed | - |
| 13 | Sobic.010G172200 | cytochrome P450, putative, expressed | - |
| 14 | Sobic.005G090600 | peptide transporter PTR2, putative, expressed | - |
| 15 | Sobic.004G217700 | enzyme of the cupin superfamily protein, putative, expressed | K06995: uncharacterized protein |
| 16 | Sobic.008G152200 | DC1 domain-containing protein, putative, expressed | - |
| 17 | Sobic.006G279400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@no apical meristem protein, putative, expressed | - |
| 18 | Sobic.004G195800 | heavy metal associated domain containing protein, expressed | - |
| 19 | Sobic.002G423600 | "Expressed in drought, cold and heat"(PubMedID : 29862293)@similar to WSI76 protein induced by water stress(PubMedID : 29862293)@glycosyl transferase 8 domain containing protein, putative, expressed | K18819: inositol 3-alpha-galactosyltransferase |
| 20 | Sobic.001G056400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed | K13222: BX1, indole-3-glycerol-phosphate lyase |
Gene co-expression network
Octagon: transcription factors
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