Gene annotation
Transcriptome id Sobic.K020500.1
Synonym Sb0199s002020
Functional annotation coatomer subunit beta-1, putative, expressed
UniProt C6JSA7
Pfam PF07718 PF01602
Panther DB PTHR10635
NCBI CDD -
KEGG Orthology K17301; COPB1, coatomer subunit beta
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport GO:0005198structural molecule activity GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT4G31480 : Coatomer, beta subunit
RAP-DB (Rice) LOC_Os01g17430.1 : coatomer subunit beta-1, putative, expressed
MaizeGDB (Corn) Zm00025a012855 , Zm00025a035182 , Zm00025a024192
Brachypodium KQK03969 , KQK03974
Barley HORVU3Hr1G040270.8 , HORVU3Hr1G040270.9 , HORVU3Hr1G040270.2 , HORVU3Hr1G040270.3 , HORVU3Hr1G040270.1 , HORVU3Hr1G040270.6 , HORVU3Hr1G040270.7 , HORVU3Hr1G040270.4 , HORVU3Hr1G040270.5 , HORVU3Hr1G111730.1 , HORVU3Hr1G040350.4 , HORVU3Hr1G040350.7 , HORVU3Hr1G040350.6 , HORVU3Hr1G040350.1 , HORVU3Hr1G040350.3 , HORVU3Hr1G040350.2
Wheat TraesCS3A02G192400 , TraesCS3D02G195500 , TraesCS3B02G221400 , TraesCS3B02G221400 , TraesCS3B02G221400 , TraesCS3B02G221400 , TraesCS3A02G192400 , TraesCS3D02G195600 , TraesCS5B02G070600 , TraesCS3D02G195600 , TraesCS3D02G195600 , TraesCS3D02G195600 , TraesCS3D02G195600 , TraesCS3D02G195600 , TraesCS3D02G195600 , TraesCS3A02G193200 , TraesCS3A02G193200 , TraesCS3A02G193200 , TraesCS5B02G070700 , TraesCS3B02G291400 , TraesCS3B02G291400 , TraesCS3B02G221200
Populus -


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cDNA sequences
Sobic.K020500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G182701 - -
2 Sobic.007G055600 "Production of (E)-alpha-berg-amotene, sesquisabinene A, (E)-beta-farnesene, zingiberene, beta-bisabolene and beta-sesquiphellandrene, cytoplasm"(PubMedID : 21880075)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@terpene synthase, putative, expressed K14174: beta-farnesene/exo-alpha-bergamotene synthase
3 Sobic.003G153800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein beta-fructofuranosidase (Os)(PubMedID : 27208977)@neutral/alkaline invertase, putative, expressed -
4 Sobic.007G076000 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@Cinnamyl alcohol dehydrogenase 9 CAD9 (At)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
5 Sobic.001G056400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K13222: BX1, indole-3-glycerol-phosphate lyase
6 Sobic.001G410450 - -
7 Sobic.001G125700 lipoxygenase, putative, expressed K15718: linoleate 9S-lipoxygenase
8 Sobic.006G005500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@von Willebrand factor type A domain containing protein, putative, expressed -
9 Sobic.003G388400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
10 Sobic.001G012000 cytochrome P450 71E1, putative, expressed K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase
11 Sobic.002G423600 "Expressed in drought, cold and heat"(PubMedID : 29862293)@similar to WSI76 protein induced by water stress(PubMedID : 29862293)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
12 Sobic.009G115400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.009G014600 Lipase class 3 family protein (At)(PubMedID : 27208977)@phospholipase, putative, expressed -
14 Sobic.009G115300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.K044407 - -
16 Sobic.002G040400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
17 Sobic.001G056500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K13222: BX1, indole-3-glycerol-phosphate lyase
18 Sobic.008G028600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY112, expressed -
19 Sobic.006G007650 - -
20 Sobic.005G219000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@patatin, putative, expressed -


Gene co-expression network
sample SobicK020500 SobicK020500 Sobic005G182701 Sobic005G182701 SobicK020500--Sobic005G182701 Sobic007G055600 Sobic007G055600 SobicK020500--Sobic007G055600 Sobic003G153800 Sobic003G153800 SobicK020500--Sobic003G153800 Sobic007G076000 Sobic007G076000 SobicK020500--Sobic007G076000 Sobic001G056400 Sobic001G056400 SobicK020500--Sobic001G056400 Sobic001G410450 Sobic001G410450 SobicK020500--Sobic001G410450 Sobic001G125700 Sobic001G125700 SobicK020500--Sobic001G125700 Sobic006G005500 Sobic006G005500 SobicK020500--Sobic006G005500 Sobic003G388400 Sobic003G388400 SobicK020500--Sobic003G388400 Sobic005G182701--Sobic007G055600 Sobic005G182701--Sobic007G076000 Sobic005G182701--Sobic001G056400 Sobic005G182701--Sobic006G005500 Sobic005G182701--Sobic001G125700 Sobic009G014600 Sobic009G014600 Sobic005G182701--Sobic009G014600 Sobic009G115400 Sobic009G115400 Sobic005G182701--Sobic009G115400 Sobic009G115300 Sobic009G115300 Sobic005G182701--Sobic009G115300 Sobic001G012000 Sobic001G012000 Sobic005G182701--Sobic001G012000 Sobic007G055600--Sobic005G182701 Sobic007G055600--Sobic007G076000 Sobic007G055600--Sobic006G005500 Sobic007G055600--Sobic001G125700 Sobic007G055600--Sobic009G014600 Sobic007G055600--Sobic001G056400 Sobic002G040400 Sobic002G040400 Sobic007G055600--Sobic002G040400 Sobic008G028600 Sobic008G028600 Sobic007G055600--Sobic008G028600 Sobic007G055600--Sobic009G115400 Sobic003G153800--SobicK020500 Sobic004G187300 Sobic004G187300 Sobic003G153800--Sobic004G187300 Sobic004G096300 Sobic004G096300 Sobic003G153800--Sobic004G096300 Sobic001G293800 Sobic001G293800 Sobic003G153800--Sobic001G293800 Sobic009G205600 Sobic009G205600 Sobic003G153800--Sobic009G205600 Sobic003G264901 Sobic003G264901 Sobic003G153800--Sobic003G264901 Sobic007G071000 Sobic007G071000 Sobic003G153800--Sobic007G071000 Sobic003G153800--Sobic001G410450 Sobic006G152500 Sobic006G152500 Sobic003G153800--Sobic006G152500 Sobic007G076000--Sobic007G055600 Sobic007G076000--Sobic005G182701 Sobic007G076000--Sobic006G005500 Sobic007G076000--Sobic001G125700 Sobic007G076000--Sobic002G040400 Sobic007G076000--Sobic008G028600 Sobic007G076000--Sobic009G014600 Sobic005G219000 Sobic005G219000 Sobic007G076000--Sobic005G219000 Sobic006G007650 Sobic006G007650 Sobic007G076000--Sobic006G007650 Sobic001G056400--Sobic005G182701 Sobic001G056400--Sobic001G012000 Sobic001G056400--Sobic007G055600 SobicK044407 SobicK044407 Sobic001G056400--SobicK044407 Sobic003G378301 Sobic003G378301 Sobic001G056400--Sobic003G378301 Sobic001G056400--Sobic007G076000 Sobic002G423600 Sobic002G423600 Sobic001G056400--Sobic002G423600 Sobic001G056500 Sobic001G056500 Sobic001G056400--Sobic001G056500 Sobic006G045000 Sobic006G045000 Sobic001G056400--Sobic006G045000 Sobic001G410450--Sobic001G056400 Sobic001G410450--Sobic001G012000 Sobic001G410450--Sobic005G182701 Sobic001G410450--SobicK044407 Sobic001G410450--Sobic002G423600 Sobic001G410450--Sobic007G055600 Sobic004G217700 Sobic004G217700 Sobic001G410450--Sobic004G217700 Sobic001G410450--Sobic006G045000 Sobic001G410450--Sobic007G076000 Sobic001G125700--Sobic006G005500 Sobic001G125700--Sobic005G219000 Sobic005G219100 Sobic005G219100 Sobic001G125700--Sobic005G219100 Sobic001G125700--Sobic008G028600 Sobic001G125700--Sobic007G076000 Sobic001G125700--Sobic002G040400 Sobic006G005400 Sobic006G005400 Sobic001G125700--Sobic006G005400 Sobic001G125700--Sobic007G055600 Sobic006G007100 Sobic006G007100 Sobic001G125700--Sobic006G007100 Sobic006G005500--Sobic001G125700 Sobic006G005500--Sobic005G219000 Sobic006G005500--Sobic008G028600 Sobic006G005500--Sobic005G219100 Sobic006G005500--Sobic007G076000 Sobic006G005500--Sobic002G040400 Sobic006G005500--Sobic007G055600 Sobic006G005500--Sobic006G005400 Sobic006G005500--Sobic006G007650 Sobic003G388400--Sobic001G125700 Sobic003G388400--Sobic006G005400 Sobic003G388400--Sobic006G005500 Sobic003G388400--Sobic005G219100 Sobic003G388400--Sobic005G219000 Sobic003G388400--Sobic007G076000 Sobic003G388400--Sobic006G007100 Sobic003G388400--Sobic009G115400 Sobic003G388400--Sobic007G055600
Octagon: transcription factors


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