Gene annotation
| Transcriptome id | Sobic.001G293800.1 |
|---|---|
| Synonym | BMY8, BAM3, Sb01g028700, CT-BMY |
| Functional annotation | chloroplast beta-amylase (PubMedID : 26465154) chloroplast beta-amylase (PubMedID : 26465154) beta-amylase, putative, expressed |
| UniProt | C5WRG3 |
| Pfam | PF01373 |
| Panther DB | PTHR31352 PTHR31352:SF1 |
| NCBI CDD | - |
| KEGG Orthology | K01177; beta-amylase |
| Gene Ontology | GO:0016161; beta-amylase activity GO:0000272polysaccharide catabolic process |
Orthologs (automatic annotation)
| TAIR | AT4G17090 : chloroplast beta-amylase |
|---|---|
| RAP-DB (Rice) | LOC_Os10g41550.1 : beta-amylase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a003420 , Zm00025a017680 , Zm00025a051902 , Zm00025a000569 |
| Brachypodium | KQJ96996 , KQK15872 , KQJ97853 |
| Barley | HORVU1Hr1G038950.8 , HORVU1Hr1G038950.9 , HORVU1Hr1G038950.2 , HORVU1Hr1G038950.1 , HORVU1Hr1G038950.6 , HORVU1Hr1G038950.7 , HORVU1Hr1G038950.4 , HORVU1Hr1G038950.5 , HORVU1Hr1G055140.1 , HORVU1Hr1G055140.2 , HORVU1Hr1G038920.3 , HORVU1Hr1G038920.2 , HORVU1Hr1G038920.1 , HORVU1Hr1G038950.10 , HORVU1Hr1G038950.11 , HORVU1Hr1G038950.12 , HORVU1Hr1G038950.13 , HORVU1Hr1G038950.14 |
| Wheat | TraesCS2D02G220900 , TraesCS2D02G220900 , TraesCS2D02G220900 , TraesCS1B02G229000 , TraesCS4B02G344300 , TraesCS2B02G240100 , TraesCS2B02G240100 , TraesCS1A02G215500 , TraesCS1B02G165400 , TraesCS1B02G165400 , TraesCS1D02G218000 , TraesCS4B02G393500 , TraesCS4B02G393500 , TraesCS1A02G147100 , TraesCS1A02G147300 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G096300 | protein phosphatase 2C, putative, expressed | - |
| 2 | Sobic.003G264901 | - | - |
| 3 | Sobic.001G377000 | auxin-repressed protein, putative, expressed | - |
| 4 | Sobic.010G172200 | cytochrome P450, putative, expressed | - |
| 5 | Sobic.003G153800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein beta-fructofuranosidase (Os)(PubMedID : 27208977)@neutral/alkaline invertase, putative, expressed | - |
| 6 | Sobic.007G071000 | no apical meristem protein, putative, expressed | - |
| 7 | Sobic.004G275200 | zinc-binding protein, putative, expressed | - |
| 8 | Sobic.006G053700 | ACT domain containing protein, expressed | - |
| 9 | Sobic.001G225400 | expressed protein | - |
| 10 | Sobic.007G148200 | auxin-repressed protein, putative, expressed | - |
| 11 | Sobic.009G205600 | anthocyanidin 5,3-O-glucosyltransferase, putative, expressed | - |
| 12 | Sobic.004G187300 | zinc finger protein, putative, expressed | - |
| 13 | Sobic.003G013600 | expressed protein | - |
| 14 | Sobic.008G152200 | DC1 domain-containing protein, putative, expressed | - |
| 15 | Sobic.001G053900 | nodulin, putative, expressed | - |
| 16 | Sobic.009G213400 | mitochondrial carrier protein, putative, expressed | K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31 |
| 17 | Sobic.010G267000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed | - |
| 18 | Sobic.007G014600 | transferase family protein, putative, expressed | - |
| 19 | Sobic.009G245700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 20 | Sobic.002G174900 | cysteine desulfurase 1, mitochondrial precursor, putative, expressed | K04487: iscS, cysteine desulfurase |
Gene co-expression network
Octagon: transcription factors
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