Gene annotation
Transcriptome id Sobic.003G013600.1
Synonym Sb03g001350
Functional annotation expressed protein
UniProt C5XKC7
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g12270.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G013600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G123300 zinc finger, C3HC4 type domain containing protein, expressed K16282: E3 ubiquitin-protein ligase RHA2
2 Sobic.009G080200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CAPIP1, putative, expressed K14496: abscisic acid receptor PYR/PYL family
3 Sobic.003G085700 expressed protein -
4 Sobic.001G225600 expressed protein -
5 Sobic.001G530350 - -
6 Sobic.010G267000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
7 Sobic.003G296300 WRKY13, expressed -
8 Sobic.001G293800 chloroplast beta-amylase(PubMedID : 26465154)@chloroplast beta-amylase(PubMedID : 26465154)@beta-amylase, putative, expressed K01177: beta-amylase
9 Sobic.001G225400 expressed protein -
10 Sobic.010G157500 zinc finger protein, putative, expressed -
11 Sobic.009G100800 expressed protein -
12 Sobic.001G093900 stem-specific protein TSJT1, putative, expressed -
13 Sobic.001G465100 hydrolase, alpha/beta fold family domain containing protein, expressed -
14 Sobic.003G320600 membrane protein, putative, expressed -
15 Sobic.001G225500 expressed protein -
16 Sobic.005G093400 expressed protein -
17 Sobic.001G345400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ring-H2 zinc finger protein, putative, expressed -
18 Sobic.004G275200 zinc-binding protein, putative, expressed -
19 Sobic.006G167800 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
20 Sobic.001G526900 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -


Gene co-expression network
sample Sobic003G013600 Sobic003G013600 Sobic003G123300 Sobic003G123300 Sobic003G013600--Sobic003G123300 Sobic009G080200 Sobic009G080200 Sobic003G013600--Sobic009G080200 Sobic003G085700 Sobic003G085700 Sobic003G013600--Sobic003G085700 Sobic001G225600 Sobic001G225600 Sobic003G013600--Sobic001G225600 Sobic001G530350 Sobic001G530350 Sobic003G013600--Sobic001G530350 Sobic010G267000 Sobic010G267000 Sobic003G013600--Sobic010G267000 Sobic003G296300 Sobic003G296300 Sobic003G013600--Sobic003G296300 Sobic001G293800 Sobic001G293800 Sobic003G013600--Sobic001G293800 Sobic001G225400 Sobic001G225400 Sobic003G013600--Sobic001G225400 Sobic003G123300--Sobic003G013600 Sobic001G465100 Sobic001G465100 Sobic003G123300--Sobic001G465100 Sobic006G051100 Sobic006G051100 Sobic003G123300--Sobic006G051100 Sobic003G123300--Sobic001G225600 Sobic002G421600 Sobic002G421600 Sobic003G123300--Sobic002G421600 Sobic006G241350 Sobic006G241350 Sobic003G123300--Sobic006G241350 Sobic002G367700 Sobic002G367700 Sobic003G123300--Sobic002G367700 Sobic003G123300--Sobic001G530350 Sobic003G123300--Sobic010G267000 Sobic009G080200--Sobic003G013600 Sobic001G285000 Sobic001G285000 Sobic009G080200--Sobic001G285000 Sobic002G117200 Sobic002G117200 Sobic009G080200--Sobic002G117200 Sobic004G275200 Sobic004G275200 Sobic009G080200--Sobic004G275200 Sobic002G123200 Sobic002G123200 Sobic009G080200--Sobic002G123200 Sobic009G156300 Sobic009G156300 Sobic009G080200--Sobic009G156300 Sobic009G080200--Sobic003G123300 Sobic001G078200 Sobic001G078200 Sobic009G080200--Sobic001G078200 Sobic002G194700 Sobic002G194700 Sobic009G080200--Sobic002G194700 Sobic003G085700--Sobic003G013600 Sobic006G167800 Sobic006G167800 Sobic003G085700--Sobic006G167800 Sobic003G085700--Sobic003G296300 Sobic003G085700--Sobic010G267000 Sobic007G148200 Sobic007G148200 Sobic003G085700--Sobic007G148200 Sobic001G093900 Sobic001G093900 Sobic003G085700--Sobic001G093900 Sobic006G152600 Sobic006G152600 Sobic003G085700--Sobic006G152600 Sobic001G075000 Sobic001G075000 Sobic003G085700--Sobic001G075000 Sobic003G085700--Sobic003G123300 Sobic001G225300 Sobic001G225300 Sobic001G225600--Sobic001G225300 Sobic001G225600--Sobic001G530350 Sobic001G225600--Sobic003G013600 Sobic009G100800 Sobic009G100800 Sobic001G225600--Sobic009G100800 Sobic001G225600--Sobic003G123300 Sobic001G225200 Sobic001G225200 Sobic001G225600--Sobic001G225200 Sobic003G299800 Sobic003G299800 Sobic001G225600--Sobic003G299800 Sobic003G400200 Sobic003G400200 Sobic001G225600--Sobic003G400200 Sobic001G225600--Sobic002G421600 Sobic006G097800 Sobic006G097800 Sobic001G530350--Sobic006G097800 Sobic001G526900 Sobic001G526900 Sobic001G530350--Sobic001G526900 Sobic001G530350--Sobic003G296300 Sobic001G530350--Sobic001G093900 Sobic001G345400 Sobic001G345400 Sobic001G530350--Sobic001G345400 Sobic001G530350--Sobic009G100800 Sobic001G530350--Sobic001G225600 Sobic001G530350--Sobic003G013600 Sobic006G246100 Sobic006G246100 Sobic001G530350--Sobic006G246100 Sobic010G267000--Sobic003G013600 Sobic010G267000--Sobic003G123300 Sobic010G267000--Sobic001G293800 Sobic004G096300 Sobic004G096300 Sobic010G267000--Sobic004G096300 Sobic010G267000--Sobic003G085700 Sobic010G276000 Sobic010G276000 Sobic010G267000--Sobic010G276000 Sobic010G267000--Sobic001G465100 Sobic001G182600 Sobic001G182600 Sobic010G267000--Sobic001G182600 Sobic010G246600 Sobic010G246600 Sobic010G267000--Sobic010G246600 Sobic003G296300--Sobic001G345400 Sobic003G296300--Sobic006G246100 Sobic004G101000 Sobic004G101000 Sobic003G296300--Sobic004G101000 Sobic003G296300--Sobic006G167800 Sobic003G296300--Sobic001G093900 Sobic010G157500 Sobic010G157500 Sobic003G296300--Sobic010G157500 Sobic009G038000 Sobic009G038000 Sobic003G296300--Sobic009G038000 Sobic001G526000 Sobic001G526000 Sobic003G296300--Sobic001G526000 Sobic001G195100 Sobic001G195100 Sobic003G296300--Sobic001G195100 Sobic001G293800--Sobic004G096300 Sobic003G264901 Sobic003G264901 Sobic001G293800--Sobic003G264901 Sobic001G377000 Sobic001G377000 Sobic001G293800--Sobic001G377000 Sobic010G172200 Sobic010G172200 Sobic001G293800--Sobic010G172200 Sobic003G153800 Sobic003G153800 Sobic001G293800--Sobic003G153800 Sobic007G071000 Sobic007G071000 Sobic001G293800--Sobic007G071000 Sobic001G293800--Sobic004G275200 Sobic006G053700 Sobic006G053700 Sobic001G293800--Sobic006G053700 Sobic001G293800--Sobic001G225400 Sobic001G225500 Sobic001G225500 Sobic001G225400--Sobic001G225500 Sobic001G225400--Sobic001G377000 Sobic001G225400--Sobic001G293800 Sobic001G225400--Sobic003G013600 Sobic001G032100 Sobic001G032100 Sobic001G225400--Sobic001G032100 Sobic003G320600 Sobic003G320600 Sobic001G225400--Sobic003G320600 Sobic001G225400--Sobic010G172200 Sobic001G225400--Sobic001G465100 Sobic001G225400--Sobic007G148200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.