Gene annotation
Transcriptome id Sobic.010G157500.1
Synonym Sb10g021020
Functional annotation zinc finger protein, putative, expressed
UniProt C5Z402
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF147
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G22500 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g34430.1 : zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a050947 , Zm00025a049897
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G296300 WRKY13, expressed -
2 Sobic.009G038200 expressed protein -
3 Sobic.006G167800 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
4 Sobic.003G013600 expressed protein -
5 Sobic.003G065600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed -
6 Sobic.002G209100 glutamate receptor, putative, expressed -
7 Sobic.008G018600 harpin-induced protein 1 domain containing protein, expressed -
8 Sobic.004G195800 heavy metal associated domain containing protein, expressed -
9 Sobic.001G093900 stem-specific protein TSJT1, putative, expressed -
10 Sobic.001G449800 OsWAK25 - OsWAK receptor-like protein kinase, expressed -
11 Sobic.002G376000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ring-H2 zinc finger protein, putative, expressed -
12 Sobic.003G123300 zinc finger, C3HC4 type domain containing protein, expressed K16282: E3 ubiquitin-protein ligase RHA2
13 Sobic.004G110400 RING-H2 finger protein, putative, expressed -
14 Sobic.006G197800 zinc-binding protein, putative, expressed -
15 Sobic.002G271600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
16 Sobic.002G041800 gibberellin receptor GID1L2, putative, expressed -
17 Sobic.009G121600 cytochrome P450 86A2, putative, expressed -
18 Sobic.002G269400 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@dehydration-responsive element-binding protein, putative, expressed -
19 Sobic.009G216050 - -
20 Sobic.006G174600 cis-zeatin O-glucosyltransferase, putative, expressed K13495: cis-zeatin O-glucosyltransferase


Gene co-expression network
sample Sobic010G157500 Sobic010G157500 Sobic003G296300 Sobic003G296300 Sobic010G157500--Sobic003G296300 Sobic009G038200 Sobic009G038200 Sobic010G157500--Sobic009G038200 Sobic006G167800 Sobic006G167800 Sobic010G157500--Sobic006G167800 Sobic003G013600 Sobic003G013600 Sobic010G157500--Sobic003G013600 Sobic003G065600 Sobic003G065600 Sobic010G157500--Sobic003G065600 Sobic002G209100 Sobic002G209100 Sobic010G157500--Sobic002G209100 Sobic008G018600 Sobic008G018600 Sobic010G157500--Sobic008G018600 Sobic004G195800 Sobic004G195800 Sobic010G157500--Sobic004G195800 Sobic001G093900 Sobic001G093900 Sobic010G157500--Sobic001G093900 Sobic001G345400 Sobic001G345400 Sobic003G296300--Sobic001G345400 Sobic006G246100 Sobic006G246100 Sobic003G296300--Sobic006G246100 Sobic004G101000 Sobic004G101000 Sobic003G296300--Sobic004G101000 Sobic003G296300--Sobic006G167800 Sobic003G296300--Sobic001G093900 Sobic003G296300--Sobic010G157500 Sobic009G038000 Sobic009G038000 Sobic003G296300--Sobic009G038000 Sobic001G526000 Sobic001G526000 Sobic003G296300--Sobic001G526000 Sobic001G195100 Sobic001G195100 Sobic003G296300--Sobic001G195100 Sobic003G284300 Sobic003G284300 Sobic009G038200--Sobic003G284300 Sobic005G063900 Sobic005G063900 Sobic009G038200--Sobic005G063900 Sobic001G321600 Sobic001G321600 Sobic009G038200--Sobic001G321600 Sobic001G019300 Sobic001G019300 Sobic009G038200--Sobic001G019300 Sobic005G190900 Sobic005G190900 Sobic009G038200--Sobic005G190900 Sobic001G449800 Sobic001G449800 Sobic009G038200--Sobic001G449800 Sobic009G038200--Sobic002G209100 Sobic009G153200 Sobic009G153200 Sobic009G038200--Sobic009G153200 Sobic002G041800 Sobic002G041800 Sobic009G038200--Sobic002G041800 Sobic006G167800--Sobic001G526000 Sobic006G167800--Sobic003G296300 Sobic004G110400 Sobic004G110400 Sobic006G167800--Sobic004G110400 Sobic002G376000 Sobic002G376000 Sobic006G167800--Sobic002G376000 Sobic006G167800--Sobic010G157500 Sobic006G167800--Sobic001G093900 Sobic009G067400 Sobic009G067400 Sobic006G167800--Sobic009G067400 Sobic006G167800--Sobic001G195100 Sobic001G144400 Sobic001G144400 Sobic006G167800--Sobic001G144400 Sobic003G123300 Sobic003G123300 Sobic003G013600--Sobic003G123300 Sobic009G080200 Sobic009G080200 Sobic003G013600--Sobic009G080200 Sobic003G085700 Sobic003G085700 Sobic003G013600--Sobic003G085700 Sobic001G225600 Sobic001G225600 Sobic003G013600--Sobic001G225600 Sobic001G530350 Sobic001G530350 Sobic003G013600--Sobic001G530350 Sobic010G267000 Sobic010G267000 Sobic003G013600--Sobic010G267000 Sobic003G013600--Sobic003G296300 Sobic001G293800 Sobic001G293800 Sobic003G013600--Sobic001G293800 Sobic001G225400 Sobic001G225400 Sobic003G013600--Sobic001G225400 Sobic003G255100 Sobic003G255100 Sobic003G065600--Sobic003G255100 Sobic003G065600--Sobic009G038200 Sobic010G079700 Sobic010G079700 Sobic003G065600--Sobic010G079700 Sobic002G271600 Sobic002G271600 Sobic003G065600--Sobic002G271600 Sobic002G287000 Sobic002G287000 Sobic003G065600--Sobic002G287000 Sobic002G155900 Sobic002G155900 Sobic003G065600--Sobic002G155900 Sobic003G065600--Sobic010G157500 Sobic006G053700 Sobic006G053700 Sobic003G065600--Sobic006G053700 Sobic003G065600--Sobic002G209100 Sobic002G209100--Sobic004G195800 Sobic002G209100--Sobic002G041800 Sobic005G085500 Sobic005G085500 Sobic002G209100--Sobic005G085500 Sobic010G120800 Sobic010G120800 Sobic002G209100--Sobic010G120800 Sobic009G252100 Sobic009G252100 Sobic002G209100--Sobic009G252100 Sobic004G217700 Sobic004G217700 Sobic002G209100--Sobic004G217700 Sobic002G209100--Sobic002G271600 Sobic004G209500 Sobic004G209500 Sobic002G209100--Sobic004G209500 Sobic002G257100 Sobic002G257100 Sobic002G209100--Sobic002G257100 Sobic002G407200 Sobic002G407200 Sobic008G018600--Sobic002G407200 Sobic001G056500 Sobic001G056500 Sobic008G018600--Sobic001G056500 Sobic008G018600--Sobic004G195800 Sobic009G216050 Sobic009G216050 Sobic008G018600--Sobic009G216050 Sobic010G214200 Sobic010G214200 Sobic008G018600--Sobic010G214200 Sobic008G018600--Sobic004G217700 Sobic001G314800 Sobic001G314800 Sobic008G018600--Sobic001G314800 Sobic008G181300 Sobic008G181300 Sobic008G018600--Sobic008G181300 Sobic001G182600 Sobic001G182600 Sobic008G018600--Sobic001G182600 Sobic004G195800--Sobic002G209100 Sobic004G195800--Sobic002G041800 Sobic004G195800--Sobic005G085500 Sobic004G195800--Sobic009G252100 Sobic004G195800--Sobic010G120800 Sobic004G195800--Sobic004G217700 Sobic001G201800 Sobic001G201800 Sobic004G195800--Sobic001G201800 Sobic004G187300 Sobic004G187300 Sobic004G195800--Sobic004G187300 Sobic005G193600 Sobic005G193600 Sobic004G195800--Sobic005G193600 Sobic001G093900--Sobic003G296300 Sobic001G093900--Sobic001G530350 Sobic001G024500 Sobic001G024500 Sobic001G093900--Sobic001G024500 Sobic001G093900--Sobic001G182600 Sobic001G093900--Sobic006G167800 Sobic001G093900--Sobic002G376000 Sobic001G093900--Sobic001G526000 Sobic001G075000 Sobic001G075000 Sobic001G093900--Sobic001G075000 Sobic001G093900--Sobic003G013600
Octagon: transcription factors


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