Gene annotation
Transcriptome id Sobic.002G269400.1
Synonym (SbDREB1);CBF6;ethylene response factor 28, SbERF28;C-repeat Binding Factor, ATCBF3, CBF3, DREB1A, dehydration response element binding (DREB) transcription factor, Sb02g030330, SbCBF6;SbCBF6
Functional annotation "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. " (PubMedID : 24086146)
Relatively high abundance in cold tolerant sorghum under cold stress (PubMedID : 26645959)
Not investigated (PubMedID : 23766026)
key regulator in cold signaling pathway (Arabidopsis) (PubMedID : 16244905)
highly upregulated during chilling in a chilling tolerant sorghum NSG (PubMedID : 29293808)
dehydration-responsive element-binding protein, putative, expressed
UniProt Q3T5N0
Pfam PF00847
Panther DB PTHR31839 PTHR31839:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G25470 : C-repeat/DRE binding factor 2
RAP-DB (Rice) LOC_Os09g35030.1 : dehydration-responsive element-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a046712 , Zm00025a014384 , Zm00025a047706 , Zm00025a047704 , Zm00025a033640 , Zm00025a038708
Brachypodium KQK00605 , KQJ91111 , KQK10781 , KQJ98221
Barley HORVU5Hr1G080310.1 , HORVU5Hr1G080450.1 , HORVU5Hr1G080450.2 , HORVU0Hr1G018280.1 , HORVU5Hr1G080400.1 , HORVU5Hr1G080230.1 , HORVU5Hr1G080230.2 , HORVU5Hr1G080230.3 , HORVU5Hr1G080300.1 , HORVU5Hr1G080300.2
Wheat TraesCS5B02G310900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G269300 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@dehydration-responsive element-binding protein, putative, expressed -
2 Sobic.010G179800 OsFBK16 - F-box domain and kelch repeat containing protein, expressed -
3 Sobic.002G376000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ring-H2 zinc finger protein, putative, expressed -
4 Sobic.004G110400 RING-H2 finger protein, putative, expressed -
5 Sobic.008G018600 harpin-induced protein 1 domain containing protein, expressed -
6 Sobic.001G088300 - -
7 Sobic.006G167800 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
8 Sobic.001G526000 hydrolase, alpha/beta fold family protein, putative, expressed -
9 Sobic.005G063900 expressed protein -
10 Sobic.001G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
11 Sobic.004G083900 plant protein of unknown function domain containing protein, expressed -
12 Sobic.010G157500 zinc finger protein, putative, expressed -
13 Sobic.001G520100 MLO domain containing protein, putative, expressed K08472: mlo protein
14 Sobic.003G331500 NHL25, putative, expressed -
15 Sobic.009G038200 expressed protein -
16 Sobic.001G024500 uncharacterized Cys-rich domain containing protein, putative, expressed -
17 Sobic.008G002700 receptor protein kinase CRINKLY4 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
18 Sobic.003G284300 expressed protein -
19 Sobic.007G220700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SAM dependent carboxyl methyltransferase, putative, expressed -
20 Sobic.001G288100 zinc-binding protein, putative, expressed -


Gene co-expression network
sample Sobic002G269400 Sobic002G269400 Sobic002G269300 Sobic002G269300 Sobic002G269400--Sobic002G269300 Sobic010G179800 Sobic010G179800 Sobic002G269400--Sobic010G179800 Sobic002G376000 Sobic002G376000 Sobic002G269400--Sobic002G376000 Sobic004G110400 Sobic004G110400 Sobic002G269400--Sobic004G110400 Sobic008G018600 Sobic008G018600 Sobic002G269400--Sobic008G018600 Sobic001G088300 Sobic001G088300 Sobic002G269400--Sobic001G088300 Sobic006G167800 Sobic006G167800 Sobic002G269400--Sobic006G167800 Sobic001G526000 Sobic001G526000 Sobic002G269400--Sobic001G526000 Sobic005G063900 Sobic005G063900 Sobic002G269400--Sobic005G063900 Sobic002G323900 Sobic002G323900 Sobic002G269300--Sobic002G323900 Sobic006G259000 Sobic006G259000 Sobic002G269300--Sobic006G259000 Sobic003G416500 Sobic003G416500 Sobic002G269300--Sobic003G416500 Sobic001G489500 Sobic001G489500 Sobic002G269300--Sobic001G489500 Sobic002G269300--Sobic001G088300 Sobic001G295700 Sobic001G295700 Sobic002G269300--Sobic001G295700 Sobic002G269300--Sobic002G269400 Sobic003G331500 Sobic003G331500 Sobic002G269300--Sobic003G331500 Sobic002G386000 Sobic002G386000 Sobic002G269300--Sobic002G386000 Sobic010G179800--Sobic002G376000 Sobic010G179800--Sobic002G269400 Sobic001G024500 Sobic001G024500 Sobic010G179800--Sobic001G024500 Sobic008G002700 Sobic008G002700 Sobic010G179800--Sobic008G002700 Sobic007G220700 Sobic007G220700 Sobic010G179800--Sobic007G220700 Sobic004G083900 Sobic004G083900 Sobic010G179800--Sobic004G083900 Sobic010G179800--Sobic003G331500 Sobic001G435500 Sobic001G435500 Sobic010G179800--Sobic001G435500 Sobic009G110200 Sobic009G110200 Sobic010G179800--Sobic009G110200 Sobic002G376000--Sobic006G167800 Sobic001G288100 Sobic001G288100 Sobic002G376000--Sobic001G288100 Sobic002G376000--Sobic010G179800 Sobic002G376000--Sobic001G526000 Sobic001G093900 Sobic001G093900 Sobic002G376000--Sobic001G093900 Sobic002G376000--Sobic001G024500 Sobic002G376000--Sobic002G269400 Sobic002G376000--Sobic004G110400 Sobic001G075000 Sobic001G075000 Sobic002G376000--Sobic001G075000 Sobic004G110400--Sobic006G167800 Sobic001G314800 Sobic001G314800 Sobic004G110400--Sobic001G314800 Sobic004G110400--Sobic001G526000 Sobic004G333300 Sobic004G333300 Sobic004G110400--Sobic004G333300 Sobic005G155600 Sobic005G155600 Sobic004G110400--Sobic005G155600 Sobic003G296300 Sobic003G296300 Sobic004G110400--Sobic003G296300 Sobic004G110400--Sobic002G376000 Sobic004G110400--Sobic002G269400 Sobic001G345400 Sobic001G345400 Sobic004G110400--Sobic001G345400 Sobic002G407200 Sobic002G407200 Sobic008G018600--Sobic002G407200 Sobic001G056500 Sobic001G056500 Sobic008G018600--Sobic001G056500 Sobic004G195800 Sobic004G195800 Sobic008G018600--Sobic004G195800 Sobic009G216050 Sobic009G216050 Sobic008G018600--Sobic009G216050 Sobic010G214200 Sobic010G214200 Sobic008G018600--Sobic010G214200 Sobic004G217700 Sobic004G217700 Sobic008G018600--Sobic004G217700 Sobic008G018600--Sobic001G314800 Sobic008G181300 Sobic008G181300 Sobic008G018600--Sobic008G181300 Sobic001G182600 Sobic001G182600 Sobic008G018600--Sobic001G182600 Sobic001G195100 Sobic001G195100 Sobic001G088300--Sobic001G195100 Sobic001G088300--Sobic001G314800 Sobic002G403300 Sobic002G403300 Sobic001G088300--Sobic002G403300 Sobic009G136400 Sobic009G136400 Sobic001G088300--Sobic009G136400 Sobic001G088300--Sobic001G526000 Sobic003G102200 Sobic003G102200 Sobic001G088300--Sobic003G102200 Sobic009G181400 Sobic009G181400 Sobic001G088300--Sobic009G181400 Sobic007G118301 Sobic007G118301 Sobic001G088300--Sobic007G118301 Sobic001G088300--Sobic002G269300 Sobic006G167800--Sobic001G526000 Sobic006G167800--Sobic003G296300 Sobic006G167800--Sobic004G110400 Sobic006G167800--Sobic002G376000 Sobic010G157500 Sobic010G157500 Sobic006G167800--Sobic010G157500 Sobic006G167800--Sobic001G093900 Sobic009G067400 Sobic009G067400 Sobic006G167800--Sobic009G067400 Sobic006G167800--Sobic001G195100 Sobic001G144400 Sobic001G144400 Sobic006G167800--Sobic001G144400 Sobic001G526000--Sobic006G167800 Sobic001G526000--Sobic003G296300 Sobic001G526000--Sobic001G088300 Sobic001G526000--Sobic001G195100 Sobic009G100500 Sobic009G100500 Sobic001G526000--Sobic009G100500 Sobic001G526000--Sobic001G314800 Sobic001G526000--Sobic006G259000 Sobic007G090300 Sobic007G090300 Sobic001G526000--Sobic007G090300 Sobic001G526000--Sobic004G110400 Sobic001G019300 Sobic001G019300 Sobic005G063900--Sobic001G019300 Sobic002G265400 Sobic002G265400 Sobic005G063900--Sobic002G265400 Sobic001G520100 Sobic001G520100 Sobic005G063900--Sobic001G520100 Sobic005G190900 Sobic005G190900 Sobic005G063900--Sobic005G190900 Sobic009G038200 Sobic009G038200 Sobic005G063900--Sobic009G038200 Sobic002G041800 Sobic002G041800 Sobic005G063900--Sobic002G041800 Sobic002G337001 Sobic002G337001 Sobic005G063900--Sobic002G337001 Sobic002G257100 Sobic002G257100 Sobic005G063900--Sobic002G257100 Sobic001G321600 Sobic001G321600 Sobic005G063900--Sobic001G321600
Octagon: transcription factors


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