Gene annotation
| Transcriptome id | Sobic.010G179800.1 |
|---|---|
| Synonym | Sb10g023140 |
| Functional annotation | OsFBK16 - F-box domain and kelch repeat containing protein, expressed |
| UniProt | C5Z595 |
| Pfam | PF00646 PF01344 |
| Panther DB | PTHR24413 PTHR24413:SF93 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0005515; protein binding |
Orthologs (automatic annotation)
| TAIR | AT1G80440 : Galactose oxidase/kelch repeat superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os06g39370.1 : OsFBK16 - F-box domain and kelch repeat containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a042268 |
| Brachypodium | KQK17832 |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.010G179800 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G376000 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ring-H2 zinc finger protein, putative, expressed | - |
| 2 | Sobic.002G269400 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@dehydration-responsive element-binding protein, putative, expressed | - |
| 3 | Sobic.001G024500 | uncharacterized Cys-rich domain containing protein, putative, expressed | - |
| 4 | Sobic.008G002700 | receptor protein kinase CRINKLY4 precursor, putative, expressed | K04730: interleukin-1 receptor-associated kinase 1 |
| 5 | Sobic.007G220700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SAM dependent carboxyl methyltransferase, putative, expressed | - |
| 6 | Sobic.004G083900 | plant protein of unknown function domain containing protein, expressed | - |
| 7 | Sobic.003G331500 | NHL25, putative, expressed | - |
| 8 | Sobic.001G435500 | tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed | - |
| 9 | Sobic.009G110200 | RING-H2 finger protein, putative, expressed | - |
| 10 | Sobic.005G086300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ANTH domain containing protein, expressed | - |
| 11 | Sobic.003G123300 | zinc finger, C3HC4 type domain containing protein, expressed | K16282: E3 ubiquitin-protein ligase RHA2 |
| 12 | Sobic.010G128000 | aspartic proteinase nepenthesin-2 precursor, putative, expressed | - |
| 13 | Sobic.001G169200 | "domain confirmed by Pfam database, expression induced by BR treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed | - |
| 14 | Sobic.003G163700 | Glutaredoxin family protein (Os)(PubMedID : 27208977)@expressed protein | K03676: grxC, GLRX, glutaredoxin 3 |
| 15 | Sobic.002G337001 | - | - |
| 16 | Sobic.005G203900 | OsGrx_C17 - glutaredoxin subgroup III, expressed | K03676: grxC, GLRX, glutaredoxin 3 |
| 17 | Sobic.006G197800 | zinc-binding protein, putative, expressed | - |
| 18 | Sobic.010G146100 | aquaporin protein, putative, expressed | K09873: aquaporin TIP |
| 19 | Sobic.001G066600 | mTERF domain containing protein, expressed | - |
| 20 | Sobic.008G117300 | Glutaredoxin family protein (At)(PubMedID : 27208977)@OsGrx_C12 - glutaredoxin subgroup III, expressed | K03676: grxC, GLRX, glutaredoxin 3 |
Gene co-expression network
Octagon: transcription factors
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