Gene annotation
Transcriptome id Sobic.004G083900.1
Synonym Sb04g006910
Functional annotation plant protein of unknown function domain containing protein, expressed
UniProt C5XXL2
Pfam PF03140
Panther DB PTHR31549 PTHR31549:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G02645 : Plant protein of unknown function (DUF247)
RAP-DB (Rice) LOC_Os08g07040.1 : plant protein of unknown function domain containing protein, expressed
MaizeGDB (Corn) Zm00025a019555 , Zm00025a055056 , Zm00025a030034 , Zm00025a049809
Brachypodium KQJ95247 , KQJ83450 , KQK19340
Barley HORVU7Hr1G029290.1 , HORVU7Hr1G029290.3 , HORVU7Hr1G029290.2 , HORVU7Hr1G029290.4
Wheat TraesCS6A02G164600 , TraesCS6B02G187100 , TraesCS6D02G148500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G179800 OsFBK16 - F-box domain and kelch repeat containing protein, expressed -
2 Sobic.002G269400 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@dehydration-responsive element-binding protein, putative, expressed -
3 Sobic.001G024500 uncharacterized Cys-rich domain containing protein, putative, expressed -
4 Sobic.006G131800 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
5 Sobic.003G284300 expressed protein -
6 Sobic.010G260700 kelch motif family protein, expressed -
7 Sobic.001G291200 - -
8 Sobic.003G075000 expressed protein -
9 Sobic.009G038200 expressed protein -
10 Sobic.007G220700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SAM dependent carboxyl methyltransferase, putative, expressed -
11 Sobic.003G320600 membrane protein, putative, expressed -
12 Sobic.003G291400 dehydrogenase, putative, expressed -
13 Sobic.001G435500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
14 Sobic.005G099700 expressed protein -
15 Sobic.008G002700 receptor protein kinase CRINKLY4 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
16 Sobic.005G220900 expressed protein -
17 Sobic.001G314900 homeobox domain containing protein, expressed -
18 Sobic.010G089200 expressed protein -
19 Sobic.003G088800 multi-copper oxidase type I family protein, putative, expressed -
20 Sobic.006G197800 zinc-binding protein, putative, expressed -


Gene co-expression network
sample Sobic004G083900 Sobic004G083900 Sobic010G179800 Sobic010G179800 Sobic004G083900--Sobic010G179800 Sobic002G269400 Sobic002G269400 Sobic004G083900--Sobic002G269400 Sobic001G024500 Sobic001G024500 Sobic004G083900--Sobic001G024500 Sobic006G131800 Sobic006G131800 Sobic004G083900--Sobic006G131800 Sobic003G284300 Sobic003G284300 Sobic004G083900--Sobic003G284300 Sobic010G260700 Sobic010G260700 Sobic004G083900--Sobic010G260700 Sobic001G291200 Sobic001G291200 Sobic004G083900--Sobic001G291200 Sobic003G075000 Sobic003G075000 Sobic004G083900--Sobic003G075000 Sobic009G038200 Sobic009G038200 Sobic004G083900--Sobic009G038200 Sobic002G376000 Sobic002G376000 Sobic010G179800--Sobic002G376000 Sobic010G179800--Sobic002G269400 Sobic010G179800--Sobic001G024500 Sobic008G002700 Sobic008G002700 Sobic010G179800--Sobic008G002700 Sobic007G220700 Sobic007G220700 Sobic010G179800--Sobic007G220700 Sobic010G179800--Sobic004G083900 Sobic003G331500 Sobic003G331500 Sobic010G179800--Sobic003G331500 Sobic001G435500 Sobic001G435500 Sobic010G179800--Sobic001G435500 Sobic009G110200 Sobic009G110200 Sobic010G179800--Sobic009G110200 Sobic002G269300 Sobic002G269300 Sobic002G269400--Sobic002G269300 Sobic002G269400--Sobic010G179800 Sobic002G269400--Sobic002G376000 Sobic004G110400 Sobic004G110400 Sobic002G269400--Sobic004G110400 Sobic008G018600 Sobic008G018600 Sobic002G269400--Sobic008G018600 Sobic001G088300 Sobic001G088300 Sobic002G269400--Sobic001G088300 Sobic006G167800 Sobic006G167800 Sobic002G269400--Sobic006G167800 Sobic001G526000 Sobic001G526000 Sobic002G269400--Sobic001G526000 Sobic005G063900 Sobic005G063900 Sobic002G269400--Sobic005G063900 Sobic001G093900 Sobic001G093900 Sobic001G024500--Sobic001G093900 Sobic001G024500--Sobic008G002700 Sobic001G024500--Sobic007G220700 Sobic001G024500--Sobic002G376000 Sobic001G024500--Sobic010G179800 Sobic001G024500--Sobic003G075000 Sobic001G075000 Sobic001G075000 Sobic001G024500--Sobic001G075000 Sobic005G161100 Sobic005G161100 Sobic001G024500--Sobic005G161100 Sobic001G182600 Sobic001G182600 Sobic001G024500--Sobic001G182600 Sobic002G281000 Sobic002G281000 Sobic006G131800--Sobic002G281000 Sobic001G404500 Sobic001G404500 Sobic006G131800--Sobic001G404500 Sobic003G291400 Sobic003G291400 Sobic006G131800--Sobic003G291400 Sobic001G314900 Sobic001G314900 Sobic006G131800--Sobic001G314900 Sobic008G063100 Sobic008G063100 Sobic006G131800--Sobic008G063100 Sobic010G089200 Sobic010G089200 Sobic006G131800--Sobic010G089200 Sobic001G525900 Sobic001G525900 Sobic006G131800--Sobic001G525900 Sobic004G224500 Sobic004G224500 Sobic006G131800--Sobic004G224500 Sobic004G254000 Sobic004G254000 Sobic006G131800--Sobic004G254000 Sobic003G284300--Sobic009G038200 Sobic006G273000 Sobic006G273000 Sobic003G284300--Sobic006G273000 Sobic001G005500 Sobic001G005500 Sobic003G284300--Sobic001G005500 Sobic001G321600 Sobic001G321600 Sobic003G284300--Sobic001G321600 Sobic001G093600 Sobic001G093600 Sobic003G284300--Sobic001G093600 Sobic001G019300 Sobic001G019300 Sobic003G284300--Sobic001G019300 Sobic006G197800 Sobic006G197800 Sobic003G284300--Sobic006G197800 Sobic003G284300--Sobic005G063900 Sobic007G014600 Sobic007G014600 Sobic003G284300--Sobic007G014600 Sobic009G191300 Sobic009G191300 Sobic010G260700--Sobic009G191300 Sobic005G099700 Sobic005G099700 Sobic010G260700--Sobic005G099700 Sobic001G070500 Sobic001G070500 Sobic010G260700--Sobic001G070500 Sobic003G052500 Sobic003G052500 Sobic010G260700--Sobic003G052500 Sobic002G033900 Sobic002G033900 Sobic010G260700--Sobic002G033900 Sobic001G078000 Sobic001G078000 Sobic010G260700--Sobic001G078000 Sobic002G119500 Sobic002G119500 Sobic010G260700--Sobic002G119500 Sobic004G056900 Sobic004G056900 Sobic010G260700--Sobic004G056900 Sobic004G272600 Sobic004G272600 Sobic010G260700--Sobic004G272600 Sobic001G053900 Sobic001G053900 Sobic001G291200--Sobic001G053900 Sobic001G240800 Sobic001G240800 Sobic001G291200--Sobic001G240800 Sobic006G053700 Sobic006G053700 Sobic001G291200--Sobic006G053700 Sobic002G376700 Sobic002G376700 Sobic001G291200--Sobic002G376700 Sobic004G096300 Sobic004G096300 Sobic001G291200--Sobic004G096300 Sobic001G291200--Sobic003G284300 Sobic003G108600 Sobic003G108600 Sobic001G291200--Sobic003G108600 Sobic003G391100 Sobic003G391100 Sobic001G291200--Sobic003G391100 Sobic010G214600 Sobic010G214600 Sobic001G291200--Sobic010G214600 Sobic003G075000--Sobic001G024500 Sobic001G131400 Sobic001G131400 Sobic003G075000--Sobic001G131400 Sobic006G100600 Sobic006G100600 Sobic003G075000--Sobic006G100600 Sobic007G194700 Sobic007G194700 Sobic003G075000--Sobic007G194700 Sobic002G345850 Sobic002G345850 Sobic003G075000--Sobic002G345850 Sobic005G107300 Sobic005G107300 Sobic003G075000--Sobic005G107300 Sobic001G087900 Sobic001G087900 Sobic003G075000--Sobic001G087900 Sobic001G072800 Sobic001G072800 Sobic003G075000--Sobic001G072800 Sobic002G066400 Sobic002G066400 Sobic003G075000--Sobic002G066400 Sobic009G038200--Sobic003G284300 Sobic009G038200--Sobic005G063900 Sobic009G038200--Sobic001G321600 Sobic009G038200--Sobic001G019300 Sobic005G190900 Sobic005G190900 Sobic009G038200--Sobic005G190900 Sobic001G449800 Sobic001G449800 Sobic009G038200--Sobic001G449800 Sobic002G209100 Sobic002G209100 Sobic009G038200--Sobic002G209100 Sobic009G153200 Sobic009G153200 Sobic009G038200--Sobic009G153200 Sobic002G041800 Sobic002G041800 Sobic009G038200--Sobic002G041800
Octagon: transcription factors


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