Gene annotation
Transcriptome id Sobic.001G024500.2,Sobic.001G024500.1
Synonym Sb01g002340, PCR2
Functional annotation uncharacterized Cys-rich domain containing protein, putative, expressed
UniProt C5WU00 , C5WU01
Pfam PF04749
Panther DB PTHR15907 PTHR15907:SF59
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G14870 : PLANT CADMIUM RESISTANCE 2
RAP-DB (Rice) LOC_Os03g61470.1 : uncharacterized Cys-rich domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a008916 , Zm00025a016380 , Zm00025a016382
Brachypodium KQK12343
Barley HORVU5Hr1G115750.2 , HORVU5Hr1G115750.3 , HORVU5Hr1G115750.1 , HORVU5Hr1G115750.4 , HORVU5Hr1G115900.1 , HORVU5Hr1G115870.1 , HORVU5Hr1G115880.1
Wheat TraesCS5B02G507700 , TraesCS4A02G365500 , TraesCS5D02G507800 , TraesCS4A02G365600 , TraesCS5B02G507500 , TraesCS4A02G365700 , TraesCS5D02G507600 , TraesCS5D02G507500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G024500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G093900 stem-specific protein TSJT1, putative, expressed -
2 Sobic.008G002700 receptor protein kinase CRINKLY4 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
3 Sobic.007G220700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SAM dependent carboxyl methyltransferase, putative, expressed -
4 Sobic.002G376000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ring-H2 zinc finger protein, putative, expressed -
5 Sobic.010G179800 OsFBK16 - F-box domain and kelch repeat containing protein, expressed -
6 Sobic.003G075000 expressed protein -
7 Sobic.001G075000 lectin-like receptor kinase, putative, expressed -
8 Sobic.005G161100 expressed protein -
9 Sobic.001G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
10 Sobic.001G225600 expressed protein -
11 Sobic.002G269400 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@dehydration-responsive element-binding protein, putative, expressed -
12 Sobic.009G150000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.003G123300 zinc finger, C3HC4 type domain containing protein, expressed K16282: E3 ubiquitin-protein ligase RHA2
14 Sobic.003G400200 plant-specific domain TIGR01615 family protein, expressed -
15 Sobic.001G032000 peptide transporter PTR2, putative, expressed -
16 Sobic.003G098700 expressed protein -
17 Sobic.009G038200 expressed protein -
18 Sobic.004G083900 plant protein of unknown function domain containing protein, expressed -
19 Sobic.006G131800 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
20 Sobic.009G232266 - -


Gene co-expression network
sample Sobic001G024500 Sobic001G024500 Sobic001G093900 Sobic001G093900 Sobic001G024500--Sobic001G093900 Sobic008G002700 Sobic008G002700 Sobic001G024500--Sobic008G002700 Sobic007G220700 Sobic007G220700 Sobic001G024500--Sobic007G220700 Sobic002G376000 Sobic002G376000 Sobic001G024500--Sobic002G376000 Sobic010G179800 Sobic010G179800 Sobic001G024500--Sobic010G179800 Sobic003G075000 Sobic003G075000 Sobic001G024500--Sobic003G075000 Sobic001G075000 Sobic001G075000 Sobic001G024500--Sobic001G075000 Sobic005G161100 Sobic005G161100 Sobic001G024500--Sobic005G161100 Sobic001G182600 Sobic001G182600 Sobic001G024500--Sobic001G182600 Sobic003G296300 Sobic003G296300 Sobic001G093900--Sobic003G296300 Sobic001G530350 Sobic001G530350 Sobic001G093900--Sobic001G530350 Sobic001G093900--Sobic001G024500 Sobic001G093900--Sobic001G182600 Sobic006G167800 Sobic006G167800 Sobic001G093900--Sobic006G167800 Sobic001G093900--Sobic002G376000 Sobic001G526000 Sobic001G526000 Sobic001G093900--Sobic001G526000 Sobic001G093900--Sobic001G075000 Sobic003G013600 Sobic003G013600 Sobic001G093900--Sobic003G013600 Sobic008G002700--Sobic001G024500 Sobic005G055900 Sobic005G055900 Sobic008G002700--Sobic005G055900 Sobic005G203900 Sobic005G203900 Sobic008G002700--Sobic005G203900 Sobic007G090475 Sobic007G090475 Sobic008G002700--Sobic007G090475 Sobic010G128000 Sobic010G128000 Sobic008G002700--Sobic010G128000 Sobic002G337001 Sobic002G337001 Sobic008G002700--Sobic002G337001 Sobic003G088800 Sobic003G088800 Sobic008G002700--Sobic003G088800 Sobic001G435500 Sobic001G435500 Sobic008G002700--Sobic001G435500 Sobic005G063900 Sobic005G063900 Sobic008G002700--Sobic005G063900 Sobic007G220700--Sobic001G024500 Sobic007G220700--Sobic010G128000 Sobic007G220700--Sobic001G435500 Sobic007G220700--Sobic010G179800 Sobic007G220700--Sobic008G002700 Sobic005G099700 Sobic005G099700 Sobic007G220700--Sobic005G099700 Sobic003G163700 Sobic003G163700 Sobic007G220700--Sobic003G163700 Sobic007G220700--Sobic007G090475 Sobic001G260850 Sobic001G260850 Sobic007G220700--Sobic001G260850 Sobic002G376000--Sobic006G167800 Sobic001G288100 Sobic001G288100 Sobic002G376000--Sobic001G288100 Sobic002G376000--Sobic010G179800 Sobic002G376000--Sobic001G526000 Sobic002G376000--Sobic001G093900 Sobic002G376000--Sobic001G024500 Sobic002G269400 Sobic002G269400 Sobic002G376000--Sobic002G269400 Sobic004G110400 Sobic004G110400 Sobic002G376000--Sobic004G110400 Sobic002G376000--Sobic001G075000 Sobic010G179800--Sobic002G376000 Sobic010G179800--Sobic002G269400 Sobic010G179800--Sobic001G024500 Sobic010G179800--Sobic008G002700 Sobic010G179800--Sobic007G220700 Sobic004G083900 Sobic004G083900 Sobic010G179800--Sobic004G083900 Sobic003G331500 Sobic003G331500 Sobic010G179800--Sobic003G331500 Sobic010G179800--Sobic001G435500 Sobic009G110200 Sobic009G110200 Sobic010G179800--Sobic009G110200 Sobic003G075000--Sobic001G024500 Sobic001G131400 Sobic001G131400 Sobic003G075000--Sobic001G131400 Sobic006G100600 Sobic006G100600 Sobic003G075000--Sobic006G100600 Sobic007G194700 Sobic007G194700 Sobic003G075000--Sobic007G194700 Sobic002G345850 Sobic002G345850 Sobic003G075000--Sobic002G345850 Sobic005G107300 Sobic005G107300 Sobic003G075000--Sobic005G107300 Sobic001G087900 Sobic001G087900 Sobic003G075000--Sobic001G087900 Sobic001G072800 Sobic001G072800 Sobic003G075000--Sobic001G072800 Sobic002G066400 Sobic002G066400 Sobic003G075000--Sobic002G066400 Sobic008G142100 Sobic008G142100 Sobic001G075000--Sobic008G142100 Sobic001G075000--Sobic001G093900 Sobic001G075000--Sobic002G376000 Sobic001G075000--Sobic003G296300 Sobic001G319100 Sobic001G319100 Sobic001G075000--Sobic001G319100 Sobic001G075000--Sobic001G024500 Sobic002G193400 Sobic002G193400 Sobic001G075000--Sobic002G193400 Sobic001G075000--Sobic006G167800 Sobic002G257100 Sobic002G257100 Sobic001G075000--Sobic002G257100 Sobic005G161100--Sobic001G093900 Sobic005G161100--Sobic001G024500 Sobic009G025900 Sobic009G025900 Sobic005G161100--Sobic009G025900 Sobic008G113000 Sobic008G113000 Sobic005G161100--Sobic008G113000 Sobic005G161100--Sobic001G182600 Sobic006G246100 Sobic006G246100 Sobic005G161100--Sobic006G246100 Sobic004G010300 Sobic004G010300 Sobic005G161100--Sobic004G010300 Sobic009G065300 Sobic009G065300 Sobic005G161100--Sobic009G065300 Sobic001G403300 Sobic001G403300 Sobic005G161100--Sobic001G403300 Sobic008G018600 Sobic008G018600 Sobic001G182600--Sobic008G018600 Sobic001G182600--Sobic001G093900 Sobic009G038200 Sobic009G038200 Sobic001G182600--Sobic009G038200 Sobic009G192100 Sobic009G192100 Sobic001G182600--Sobic009G192100 Sobic008G181300 Sobic008G181300 Sobic001G182600--Sobic008G181300 Sobic001G449800 Sobic001G449800 Sobic001G182600--Sobic001G449800 Sobic005G190900 Sobic005G190900 Sobic001G182600--Sobic005G190900 Sobic009G233900 Sobic009G233900 Sobic001G182600--Sobic009G233900 Sobic006G078500 Sobic006G078500 Sobic001G182600--Sobic006G078500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.