Gene annotation
| Transcriptome id | Sobic.001G032000.1 |
|---|---|
| Synonym | Sb01g002990 |
| Functional annotation | peptide transporter PTR2, putative, expressed |
| UniProt | C5WUY9 |
| Pfam | PF00854 |
| Panther DB | PTHR11654 PTHR11654:SF79 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016020; membrane GO:0006810transport GO:0005215transporter activity |
Orthologs (automatic annotation)
| TAIR | AT2G37900 : Major facilitator superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g60850.1 : peptide transporter PTR2, putative, expressed |
| MaizeGDB (Corn) | Zm00025a008843 , Zm00025a016416 , Zm00025a017653 |
| Brachypodium | KQK12399 , KQJ97031 |
| Barley | HORVU1Hr1G039670.4 , HORVU5Hr1G114260.5 , HORVU5Hr1G114260.4 , HORVU5Hr1G114330.3 , HORVU5Hr1G114330.2 , HORVU5Hr1G114330.1 , HORVU5Hr1G114260.3 , HORVU1Hr1G039670.8 , HORVU1Hr1G039670.9 , HORVU5Hr1G114260.2 , HORVU1Hr1G039670.1 , HORVU1Hr1G039670.2 , HORVU1Hr1G039670.3 , HORVU1Hr1G039670.5 , HORVU1Hr1G039670.6 , HORVU1Hr1G039670.7 , HORVU5Hr1G114260.6 |
| Wheat | TraesCS5A02G485300 , TraesCS5B02G498700 , TraesCS5B02G498400 , TraesCS5D02G498500 , TraesCS5A02G485000 , TraesCS3D02G189500 , TraesCS5B02G498500 , TraesCS5A02G485200 , TraesCS5D02G498800 , TraesCS3B02G215200 , TraesCS5D02G498700 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G290300 | expressed protein | - |
| 2 | Sobic.009G023200 | glycine-rich protein A3, putative, expressed | - |
| 3 | Sobic.003G082600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsCML16 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 4 | Sobic.001G234800 | inorganic phosphate transporter, putative, expressed | K08176: MFS transporter, PHS family, inorganic phosphate transporter |
| 5 | Sobic.003G202200 | uncharacterized protein PA4923, putative, expressed | K06966: pyrimidine/purine-5'-nucleotide nucleosidase |
| 6 | Sobic.002G405600 | early response to dehydration 15, putative, expressed | - |
| 7 | Sobic.002G345850 | - | - |
| 8 | Sobic.010G204600 | SNF7 domain containing protein, putative, expressed | K12197: CHMP1, VPS46, charged multivesicular body protein 1 |
| 9 | Sobic.006G206000 | WRKY68, expressed | - |
| 10 | Sobic.010G166500 | amino acid transporter, putative, expressed | - |
| 11 | Sobic.002G066400 | OsFBDUF18 - F-box and DUF domain containing protein, expressed | - |
| 12 | Sobic.003G341600 | prenylated rab acceptor, putative, expressed | - |
| 13 | Sobic.010G267600 | similar to Putative senescence-associated protein(PubMedID : 29862293)@senescence-associated protein, putative, expressed | - |
| 14 | Sobic.003G050300 | peroxidases (PubMedID : 28944535)@peroxidase precursor, putative, expressed | K00430: peroxidase |
| 15 | Sobic.003G144900 | expressed protein | - |
| 16 | Sobic.010G135000 | thioredoxin reductase 2, putative, expressed | K00384: trxB, thioredoxin reductase (NADPH) |
| 17 | Sobic.003G092900 | expressed protein | - |
| 18 | Sobic.001G259900 | tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
| 19 | Sobic.001G247300 | "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed | K01537: P-type Ca2+ transporter type 2C |
| 20 | Sobic.003G279300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoethanolamine/phosphocholine phosphatase, putative, expressed | K06124: phosphoethanolamine/phosphocholine phosphatase |
Gene co-expression network
Octagon: transcription factors
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