Gene annotation
Transcriptome id Sobic.003G341600.1
Synonym PRA1.B2, Sb03g038560
Functional annotation prenylated rab acceptor, putative, expressed
UniProt C5XNX0
Pfam PF03208
Panther DB PTHR19317 PTHR19317:SF12
NCBI CDD KOG3142; Prenylated rab acceptor 1
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G38360 : prenylated RAB acceptor 1.B4
RAP-DB (Rice) LOC_Os05g39670.1 : prenylated rab acceptor, putative, expressed
MaizeGDB (Corn) Zm00025a027015
Brachypodium KQK10392
Barley HORVU2Hr1G086930.1 , HORVU3Hr1G088130.1 , HORVU3Hr1G088130.2
Wheat -
Populus -


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cDNA sequences
Sobic.003G341600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G367800 bolA, putative, expressed K05527: BolA family transcriptional regulator, general stress-responsive regulator
2 Sobic.003G254300 peroxiredoxin, putative, expressed -
3 Sobic.003G254800 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA5 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
4 Sobic.007G186800 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
5 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
6 Sobic.001G131400 thioesterase family protein, putative, expressed -
7 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
8 Sobic.001G032000 peptide transporter PTR2, putative, expressed -
9 Sobic.003G150000 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
10 Sobic.009G176000 expressed protein K03945: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 1
11 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
12 Sobic.009G054800 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
13 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
14 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
15 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
16 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
17 Sobic.001G175300 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
18 Sobic.010G237000 coiled-coil domain-containing protein 72, putative, expressed -
19 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
20 Sobic.001G134400 CHCH domain containing protein, expressed -


Gene co-expression network
sample Sobic003G341600 Sobic003G341600 Sobic003G367800 Sobic003G367800 Sobic003G341600--Sobic003G367800 Sobic003G254300 Sobic003G254300 Sobic003G341600--Sobic003G254300 Sobic003G254800 Sobic003G254800 Sobic003G341600--Sobic003G254800 Sobic007G186800 Sobic007G186800 Sobic003G341600--Sobic007G186800 Sobic010G204600 Sobic010G204600 Sobic003G341600--Sobic010G204600 Sobic001G131400 Sobic001G131400 Sobic003G341600--Sobic001G131400 Sobic001G226500 Sobic001G226500 Sobic003G341600--Sobic001G226500 Sobic001G032000 Sobic001G032000 Sobic003G341600--Sobic001G032000 Sobic003G150000 Sobic003G150000 Sobic003G341600--Sobic003G150000 Sobic003G367800--Sobic003G341600 Sobic002G093000 Sobic002G093000 Sobic003G367800--Sobic002G093000 Sobic003G367800--Sobic010G204600 Sobic003G367800--Sobic003G150000 Sobic003G306100 Sobic003G306100 Sobic003G367800--Sobic003G306100 Sobic003G025700 Sobic003G025700 Sobic003G367800--Sobic003G025700 Sobic010G041600 Sobic010G041600 Sobic003G367800--Sobic010G041600 Sobic003G367800--Sobic003G254300 Sobic004G330700 Sobic004G330700 Sobic003G367800--Sobic004G330700 Sobic009G215200 Sobic009G215200 Sobic003G254300--Sobic009G215200 Sobic001G130301 Sobic001G130301 Sobic003G254300--Sobic001G130301 Sobic004G211833 Sobic004G211833 Sobic003G254300--Sobic004G211833 Sobic001G018900 Sobic001G018900 Sobic003G254300--Sobic001G018900 Sobic001G374700 Sobic001G374700 Sobic003G254300--Sobic001G374700 Sobic010G012500 Sobic010G012500 Sobic003G254300--Sobic010G012500 Sobic006G047400 Sobic006G047400 Sobic003G254300--Sobic006G047400 Sobic007G051000 Sobic007G051000 Sobic003G254300--Sobic007G051000 Sobic007G197800 Sobic007G197800 Sobic003G254300--Sobic007G197800 Sobic001G483100 Sobic001G483100 Sobic003G254800--Sobic001G483100 Sobic003G249700 Sobic003G249700 Sobic003G254800--Sobic003G249700 Sobic010G204500 Sobic010G204500 Sobic003G254800--Sobic010G204500 Sobic003G254800--Sobic003G254300 Sobic001G537200 Sobic001G537200 Sobic003G254800--Sobic001G537200 Sobic001G039400 Sobic001G039400 Sobic003G254800--Sobic001G039400 Sobic003G254800--Sobic001G018900 Sobic003G408100 Sobic003G408100 Sobic003G254800--Sobic003G408100 Sobic001G128400 Sobic001G128400 Sobic003G254800--Sobic001G128400 Sobic001G034700 Sobic001G034700 Sobic007G186800--Sobic001G034700 Sobic007G134000 Sobic007G134000 Sobic007G186800--Sobic007G134000 Sobic007G186800--Sobic003G254800 Sobic005G188100 Sobic005G188100 Sobic007G186800--Sobic005G188100 Sobic002G257400 Sobic002G257400 Sobic007G186800--Sobic002G257400 Sobic003G018600 Sobic003G018600 Sobic007G186800--Sobic003G018600 Sobic001G086300 Sobic001G086300 Sobic007G186800--Sobic001G086300 Sobic007G186800--Sobic001G128400 Sobic001G172000 Sobic001G172000 Sobic007G186800--Sobic001G172000 Sobic001G095300 Sobic001G095300 Sobic010G204600--Sobic001G095300 Sobic003G063200 Sobic003G063200 Sobic010G204600--Sobic003G063200 Sobic002G405600 Sobic002G405600 Sobic010G204600--Sobic002G405600 Sobic004G157000 Sobic004G157000 Sobic010G204600--Sobic004G157000 Sobic009G023200 Sobic009G023200 Sobic010G204600--Sobic009G023200 Sobic009G129000 Sobic009G129000 Sobic010G204600--Sobic009G129000 Sobic001G055600 Sobic001G055600 Sobic010G204600--Sobic001G055600 Sobic003G202200 Sobic003G202200 Sobic010G204600--Sobic003G202200 Sobic009G033700 Sobic009G033700 Sobic010G204600--Sobic009G033700 Sobic006G180200 Sobic006G180200 Sobic001G131400--Sobic006G180200 Sobic001G353600 Sobic001G353600 Sobic001G131400--Sobic001G353600 Sobic010G178200 Sobic010G178200 Sobic001G131400--Sobic010G178200 Sobic009G038100 Sobic009G038100 Sobic001G131400--Sobic009G038100 Sobic001G074300 Sobic001G074300 Sobic001G131400--Sobic001G074300 Sobic009G176000 Sobic009G176000 Sobic001G131400--Sobic009G176000 Sobic004G151400 Sobic004G151400 Sobic001G131400--Sobic004G151400 Sobic008G189300 Sobic008G189300 Sobic001G131400--Sobic008G189300 Sobic010G135000 Sobic010G135000 Sobic001G131400--Sobic010G135000 Sobic001G226500--Sobic003G249700 Sobic007G019400 Sobic007G019400 Sobic001G226500--Sobic007G019400 Sobic009G076400 Sobic009G076400 Sobic001G226500--Sobic009G076400 Sobic004G008400 Sobic004G008400 Sobic001G226500--Sobic004G008400 Sobic002G286900 Sobic002G286900 Sobic001G226500--Sobic002G286900 Sobic007G053300 Sobic007G053300 Sobic001G226500--Sobic007G053300 Sobic006G213000 Sobic006G213000 Sobic001G226500--Sobic006G213000 Sobic001G226500--Sobic001G130301 Sobic009G054800 Sobic009G054800 Sobic001G226500--Sobic009G054800 Sobic003G290300 Sobic003G290300 Sobic001G032000--Sobic003G290300 Sobic001G032000--Sobic009G023200 Sobic003G082600 Sobic003G082600 Sobic001G032000--Sobic003G082600 Sobic001G234800 Sobic001G234800 Sobic001G032000--Sobic001G234800 Sobic001G032000--Sobic003G202200 Sobic001G032000--Sobic002G405600 Sobic002G345850 Sobic002G345850 Sobic001G032000--Sobic002G345850 Sobic001G032000--Sobic010G204600 Sobic006G206000 Sobic006G206000 Sobic001G032000--Sobic006G206000 Sobic005G110800 Sobic005G110800 Sobic003G150000--Sobic005G110800 Sobic003G150000--Sobic010G204500 Sobic003G150000--Sobic003G249700 Sobic001G493001 Sobic001G493001 Sobic003G150000--Sobic001G493001 Sobic001G403500 Sobic001G403500 Sobic003G150000--Sobic001G403500 Sobic001G054900 Sobic001G054900 Sobic003G150000--Sobic001G054900 Sobic009G050300 Sobic009G050300 Sobic003G150000--Sobic009G050300 Sobic005G019700 Sobic005G019700 Sobic003G150000--Sobic005G019700 Sobic009G163800 Sobic009G163800 Sobic003G150000--Sobic009G163800
Octagon: transcription factors


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