Gene annotation
Transcriptome id Sobic.010G237000.1,Sobic.010G237000.2
Synonym
Functional annotation coiled-coil domain-containing protein 72, putative, expressed
UniProt A0A194YM41 , A0A1W0VUI4
Pfam PF09072
Panther DB PTHR28632
NCBI CDD KOG4766; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G15270 : Translation machinery associated TMA7
RAP-DB (Rice) LOC_Os02g06450.1 : coiled-coil domain-containing protein 72, putative, expressed
MaizeGDB (Corn) Zm00025a041842 , Zm00025a018191
Brachypodium KQK17248
Barley -
Wheat TraesCS7D02G436100
Populus -


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cDNA sequences
Sobic.010G237000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G016201 - K09481: SEC61B, protein transport protein SEC61 subunit beta
2 Sobic.003G344600 BAG domain containing protein, expressed -
3 Sobic.001G037000 PHD finger protein, putative, expressed -
4 Sobic.002G330000 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
5 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
6 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
7 Sobic.002G282400 expressed protein -
8 Sobic.003G254800 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA5 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
9 Sobic.003G350300 ubiquitin-conjugating enzyme, putative, expressed K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1
10 Sobic.006G141500 expressed protein -
11 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
12 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
13 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
14 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
15 Sobic.001G034700 actin-depolymerizing factor, putative, expressed K05765: cofilin
16 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
17 Sobic.010G121300 nitrate-induced NOI protein, putative, expressed -
18 Sobic.008G058300 RNA polymerases N 8 kDa subunit, putative, expressed K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
19 Sobic.001G445800 expressed protein -
20 Sobic.001G483100 peptidase, T1 family, putative, expressed K02730: 20S proteasome subunit alpha 1


Gene co-expression network
sample Sobic010G237000 Sobic010G237000 Sobic009G016201 Sobic009G016201 Sobic010G237000--Sobic009G016201 Sobic003G344600 Sobic003G344600 Sobic010G237000--Sobic003G344600 Sobic001G037000 Sobic001G037000 Sobic010G237000--Sobic001G037000 Sobic002G330000 Sobic002G330000 Sobic010G237000--Sobic002G330000 Sobic001G128400 Sobic001G128400 Sobic010G237000--Sobic001G128400 Sobic003G249800 Sobic003G249800 Sobic010G237000--Sobic003G249800 Sobic002G282400 Sobic002G282400 Sobic010G237000--Sobic002G282400 Sobic003G254800 Sobic003G254800 Sobic010G237000--Sobic003G254800 Sobic003G350300 Sobic003G350300 Sobic010G237000--Sobic003G350300 Sobic002G263800 Sobic002G263800 Sobic009G016201--Sobic002G263800 Sobic007G095400 Sobic007G095400 Sobic009G016201--Sobic007G095400 Sobic008G132800 Sobic008G132800 Sobic009G016201--Sobic008G132800 Sobic004G172700 Sobic004G172700 Sobic009G016201--Sobic004G172700 Sobic009G016201--Sobic003G249800 Sobic009G016201--Sobic001G037000 Sobic008G161000 Sobic008G161000 Sobic009G016201--Sobic008G161000 Sobic009G016201--Sobic010G237000 Sobic010G029400 Sobic010G029400 Sobic009G016201--Sobic010G029400 Sobic003G344600--Sobic003G249800 Sobic001G009500 Sobic001G009500 Sobic003G344600--Sobic001G009500 Sobic003G429000 Sobic003G429000 Sobic003G344600--Sobic003G429000 Sobic009G180000 Sobic009G180000 Sobic003G344600--Sobic009G180000 Sobic001G054900 Sobic001G054900 Sobic003G344600--Sobic001G054900 Sobic003G344600--Sobic002G282400 Sobic002G335300 Sobic002G335300 Sobic003G344600--Sobic002G335300 Sobic003G344600--Sobic002G330000 Sobic003G344600--Sobic010G237000 Sobic001G037000--Sobic003G249800 Sobic003G063200 Sobic003G063200 Sobic001G037000--Sobic003G063200 Sobic001G422900 Sobic001G422900 Sobic001G037000--Sobic001G422900 Sobic010G204600 Sobic010G204600 Sobic001G037000--Sobic010G204600 Sobic001G067601 Sobic001G067601 Sobic001G037000--Sobic001G067601 Sobic001G037000--Sobic009G016201 Sobic003G265200 Sobic003G265200 Sobic001G037000--Sobic003G265200 Sobic002G205300 Sobic002G205300 Sobic001G037000--Sobic002G205300 Sobic003G181500 Sobic003G181500 Sobic001G037000--Sobic003G181500 Sobic004G145801 Sobic004G145801 Sobic002G330000--Sobic004G145801 Sobic003G321700 Sobic003G321700 Sobic002G330000--Sobic003G321700 Sobic007G212600 Sobic007G212600 Sobic002G330000--Sobic007G212600 Sobic010G260100 Sobic010G260100 Sobic002G330000--Sobic010G260100 Sobic002G330000--Sobic003G249800 Sobic005G019700 Sobic005G019700 Sobic002G330000--Sobic005G019700 Sobic001G091801 Sobic001G091801 Sobic002G330000--Sobic001G091801 Sobic010G230700 Sobic010G230700 Sobic002G330000--Sobic010G230700 Sobic001G390300 Sobic001G390300 Sobic002G330000--Sobic001G390300 Sobic005G111100 Sobic005G111100 Sobic001G128400--Sobic005G111100 Sobic003G129800 Sobic003G129800 Sobic001G128400--Sobic003G129800 Sobic010G204500 Sobic010G204500 Sobic001G128400--Sobic010G204500 Sobic006G081100 Sobic006G081100 Sobic001G128400--Sobic006G081100 Sobic003G249700 Sobic003G249700 Sobic001G128400--Sobic003G249700 Sobic002G049300 Sobic002G049300 Sobic001G128400--Sobic002G049300 Sobic010G054200 Sobic010G054200 Sobic001G128400--Sobic010G054200 Sobic003G280700 Sobic003G280700 Sobic001G128400--Sobic003G280700 Sobic003G109600 Sobic003G109600 Sobic001G128400--Sobic003G109600 Sobic003G249800--Sobic008G161000 Sobic003G249800--Sobic001G037000 Sobic009G033700 Sobic009G033700 Sobic003G249800--Sobic009G033700 Sobic002G046100 Sobic002G046100 Sobic003G249800--Sobic002G046100 Sobic003G249800--Sobic002G282400 Sobic003G249800--Sobic002G330000 Sobic009G143400 Sobic009G143400 Sobic003G249800--Sobic009G143400 Sobic002G211900 Sobic002G211900 Sobic003G249800--Sobic002G211900 Sobic003G249800--Sobic003G181500 Sobic002G282400--Sobic003G249800 Sobic010G243200 Sobic010G243200 Sobic002G282400--Sobic010G243200 Sobic002G282400--Sobic009G143400 Sobic006G141500 Sobic006G141500 Sobic002G282400--Sobic006G141500 Sobic002G282400--Sobic003G181500 Sobic002G282400--Sobic001G037000 Sobic001G071100 Sobic001G071100 Sobic002G282400--Sobic001G071100 Sobic002G282400--Sobic002G211900 Sobic002G393000 Sobic002G393000 Sobic002G282400--Sobic002G393000 Sobic001G483100 Sobic001G483100 Sobic003G254800--Sobic001G483100 Sobic003G254800--Sobic003G249700 Sobic003G254800--Sobic010G204500 Sobic003G254300 Sobic003G254300 Sobic003G254800--Sobic003G254300 Sobic001G537200 Sobic001G537200 Sobic003G254800--Sobic001G537200 Sobic001G039400 Sobic001G039400 Sobic003G254800--Sobic001G039400 Sobic001G018900 Sobic001G018900 Sobic003G254800--Sobic001G018900 Sobic003G408100 Sobic003G408100 Sobic003G254800--Sobic003G408100 Sobic003G254800--Sobic001G128400 Sobic004G187900 Sobic004G187900 Sobic003G350300--Sobic004G187900 Sobic002G345300 Sobic002G345300 Sobic003G350300--Sobic002G345300 Sobic003G350300--Sobic002G046100 Sobic003G285800 Sobic003G285800 Sobic003G350300--Sobic003G285800 Sobic001G281400 Sobic001G281400 Sobic003G350300--Sobic001G281400 Sobic004G321300 Sobic004G321300 Sobic003G350300--Sobic004G321300 Sobic010G274900 Sobic010G274900 Sobic003G350300--Sobic010G274900 Sobic010G086200 Sobic010G086200 Sobic003G350300--Sobic010G086200 Sobic003G350300--Sobic003G181500
Octagon: transcription factors


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