Gene annotation
| Transcriptome id | Sobic.007G220700.1 |
|---|---|
| Synonym | JMT, Sb07g028690 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) SAM dependent carboxyl methyltransferase, putative, expressed |
| UniProt | C5YJC2 |
| Pfam | PF03492 |
| Panther DB | PTHR31009 PTHR31009:SF6 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0008168; methyltransferase activity |
Orthologs (automatic annotation)
| TAIR | AT3G11480 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g48770.1 : SAM dependent carboxyl methyltransferase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a033733 , Zm00025a033732 |
| Brachypodium | KQK18525 |
| Barley | - |
| Wheat | TraesCS4B02G381300 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G024500 | uncharacterized Cys-rich domain containing protein, putative, expressed | - |
| 2 | Sobic.010G128000 | aspartic proteinase nepenthesin-2 precursor, putative, expressed | - |
| 3 | Sobic.001G435500 | tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed | - |
| 4 | Sobic.010G179800 | OsFBK16 - F-box domain and kelch repeat containing protein, expressed | - |
| 5 | Sobic.008G002700 | receptor protein kinase CRINKLY4 precursor, putative, expressed | K04730: interleukin-1 receptor-associated kinase 1 |
| 6 | Sobic.005G099700 | expressed protein | - |
| 7 | Sobic.003G163700 | Glutaredoxin family protein (Os)(PubMedID : 27208977)@expressed protein | K03676: grxC, GLRX, glutaredoxin 3 |
| 8 | Sobic.007G090475 | - | - |
| 9 | Sobic.001G260850 | - | - |
| 10 | Sobic.001G344600 | late embryogenesis abundant protein, putative, expressed | - |
| 11 | Sobic.008G036350 | - | - |
| 12 | Sobic.005G204000 | OsGrx_C17 - glutaredoxin subgroup III, expressed | K03676: grxC, GLRX, glutaredoxin 3 |
| 13 | Sobic.002G269400 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@dehydration-responsive element-binding protein, putative, expressed | - |
| 14 | Sobic.001G066600 | mTERF domain containing protein, expressed | - |
| 15 | Sobic.008G117300 | Glutaredoxin family protein (At)(PubMedID : 27208977)@OsGrx_C12 - glutaredoxin subgroup III, expressed | K03676: grxC, GLRX, glutaredoxin 3 |
| 16 | Sobic.001G070500 | Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed | K02694: photosystem I subunit III |
| 17 | Sobic.005G055900 | expressed protein | - |
| 18 | Sobic.004G272600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed | - |
| 19 | Sobic.003G385700 | - | - |
| 20 | Sobic.009G150000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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