Gene annotation
| Transcriptome id | Sobic.003G088800.1 |
|---|---|
| Synonym | LPR1, Sb03g007470 |
| Functional annotation | multi-copper oxidase type I family protein, putative, expressed |
| UniProt | C5XE28 |
| Pfam | PF00394 PF07732 PF07731 |
| Panther DB | PTHR11709 PTHR11709:SF89 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016491; oxidoreductase activity GO:0005507copper ion binding |
Orthologs (automatic annotation)
| TAIR | AT1G23010 : Cupredoxin superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g03549.1 : multi-copper oxidase type I family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a023659 |
| Brachypodium | KQK02502 |
| Barley | HORVU3Hr1G004360.8 , HORVU3Hr1G004360.1 , HORVU3Hr1G004360.2 , HORVU3Hr1G004360.3 , HORVU3Hr1G004360.4 , HORVU3Hr1G004360.5 , HORVU3Hr1G004360.6 , HORVU3Hr1G004360.7 |
| Wheat | TraesCS1B02G033000 , TraesCS3A02G047500 , TraesCS3B02G035200 , TraesCS3D02G032400 , TraesCS3D02G032400 , TraesCS1A02G027100 |
| Populus | - |
JBrowse
| Sobic.003G088800 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G275200 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 2 | Sobic.001G435500 | tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed | - |
| 3 | Sobic.002G337001 | - | - |
| 4 | Sobic.008G015100 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed | K14487: auxin responsive GH3 gene family |
| 5 | Sobic.001G019300 | WD40-like Beta Propeller Repeat family protein, expressed | - |
| 6 | Sobic.005G055900 | expressed protein | - |
| 7 | Sobic.005G203900 | OsGrx_C17 - glutaredoxin subgroup III, expressed | K03676: grxC, GLRX, glutaredoxin 3 |
| 8 | Sobic.003G369000 | - | - |
| 9 | Sobic.005G099700 | expressed protein | - |
| 10 | Sobic.001G066600 | mTERF domain containing protein, expressed | - |
| 11 | Sobic.010G189300 | Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08909: light-harvesting complex I chlorophyll a/b binding protein 3 |
| 12 | Sobic.002G395200 | gibberellin receptor GID1L2, putative, expressed | - |
| 13 | Sobic.006G135100 | B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed | - |
| 14 | Sobic.008G117300 | Glutaredoxin family protein (At)(PubMedID : 27208977)@OsGrx_C12 - glutaredoxin subgroup III, expressed | K03676: grxC, GLRX, glutaredoxin 3 |
| 15 | Sobic.003G163700 | Glutaredoxin family protein (Os)(PubMedID : 27208977)@expressed protein | K03676: grxC, GLRX, glutaredoxin 3 |
| 16 | Sobic.007G136900 | Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed | K08910: light-harvesting complex I chlorophyll a/b binding protein 4 |
| 17 | Sobic.009G202600 | glycerol-3-phosphate acyltransferase 1, putative, expressed | K13508: glycerol-3-phosphate acyltransferase |
| 18 | Sobic.001G310800 | lectin-like receptor kinase, putative, expressed | - |
| 19 | Sobic.006G273000 | AT hook motif domain containing protein, expressed | - |
| 20 | Sobic.001G070500 | Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed | K02694: photosystem I subunit III |
Gene co-expression network
Octagon: transcription factors
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