Gene annotation
Transcriptome id Sobic.010G260700.1
Synonym Sb10g029710, KUF1
Functional annotation kelch motif family protein, expressed
UniProt C5Z9E8
Pfam -
Panther DB PTHR24414 PTHR24414:SF38
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G31350 : KAR-UP F-box 1
RAP-DB (Rice) LOC_Os06g49750.1 : kelch motif family protein, expressed
MaizeGDB (Corn) Zm00025a018452
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G191300 photosystem II reaction center W protein, chloroplast precursor, putative, expressed K02721: photosystem II PsbW protein
2 Sobic.005G099700 expressed protein -
3 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
4 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
5 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
6 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
7 Sobic.002G119500 Photosystem I reaction center subunit IV(PubMedID : 26186930)@photosystem I reaction center subunit IV A, chloroplast precursor, putative, expressed K02693: photosystem I subunit IV
8 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
9 Sobic.004G272600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
11 Sobic.005G015200 Phototropic-responsive NPH3 family protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BTBN22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
12 Sobic.003G359100 sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed K01100: sedoheptulose-bisphosphatase
13 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
14 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
15 Sobic.004G071800 - -
16 Sobic.008G038300 uncharacterized protein ycf53, putative, expressed -
17 Sobic.008G134800 shikimate kinase, putative, expressed -
18 Sobic.007G223500 expressed protein -
19 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
20 Sobic.004G035500 -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family


Gene co-expression network
sample Sobic010G260700 Sobic010G260700 Sobic009G191300 Sobic009G191300 Sobic010G260700--Sobic009G191300 Sobic005G099700 Sobic005G099700 Sobic010G260700--Sobic005G099700 Sobic001G070500 Sobic001G070500 Sobic010G260700--Sobic001G070500 Sobic003G052500 Sobic003G052500 Sobic010G260700--Sobic003G052500 Sobic002G033900 Sobic002G033900 Sobic010G260700--Sobic002G033900 Sobic001G078000 Sobic001G078000 Sobic010G260700--Sobic001G078000 Sobic002G119500 Sobic002G119500 Sobic010G260700--Sobic002G119500 Sobic004G056900 Sobic004G056900 Sobic010G260700--Sobic004G056900 Sobic004G272600 Sobic004G272600 Sobic010G260700--Sobic004G272600 Sobic008G038300 Sobic008G038300 Sobic009G191300--Sobic008G038300 Sobic003G209800 Sobic003G209800 Sobic009G191300--Sobic003G209800 Sobic002G040100 Sobic002G040100 Sobic009G191300--Sobic002G040100 Sobic009G191300--Sobic003G052500 Sobic004G035500 Sobic004G035500 Sobic009G191300--Sobic004G035500 Sobic003G359100 Sobic003G359100 Sobic009G191300--Sobic003G359100 Sobic003G199800 Sobic003G199800 Sobic009G191300--Sobic003G199800 Sobic010G109500 Sobic010G109500 Sobic009G191300--Sobic010G109500 Sobic001G338700 Sobic001G338700 Sobic009G191300--Sobic001G338700 Sobic001G435500 Sobic001G435500 Sobic005G099700--Sobic001G435500 Sobic005G099700--Sobic001G070500 Sobic010G189300 Sobic010G189300 Sobic005G099700--Sobic010G189300 Sobic003G163700 Sobic003G163700 Sobic005G099700--Sobic003G163700 Sobic005G099700--Sobic004G272600 Sobic005G099700--Sobic002G033900 Sobic001G066600 Sobic001G066600 Sobic005G099700--Sobic001G066600 Sobic006G073500 Sobic006G073500 Sobic005G099700--Sobic006G073500 Sobic009G229700 Sobic009G229700 Sobic005G099700--Sobic009G229700 Sobic001G070500--Sobic002G033900 Sobic001G070500--Sobic006G073500 Sobic001G070500--Sobic004G056900 Sobic001G070500--Sobic010G189300 Sobic001G070500--Sobic009G229700 Sobic002G242000 Sobic002G242000 Sobic001G070500--Sobic002G242000 Sobic001G046900 Sobic001G046900 Sobic001G070500--Sobic001G046900 Sobic007G136900 Sobic007G136900 Sobic001G070500--Sobic007G136900 Sobic001G070500--Sobic003G052500 Sobic010G241000 Sobic010G241000 Sobic003G052500--Sobic010G241000 Sobic003G052500--Sobic006G073500 Sobic003G052500--Sobic004G056900 Sobic003G052500--Sobic002G033900 Sobic006G105900 Sobic006G105900 Sobic003G052500--Sobic006G105900 Sobic003G052500--Sobic001G070500 Sobic003G052500--Sobic003G209800 Sobic004G235200 Sobic004G235200 Sobic003G052500--Sobic004G235200 Sobic003G052500--Sobic001G338700 Sobic002G033900--Sobic006G073500 Sobic002G033900--Sobic009G229700 Sobic002G033900--Sobic001G070500 Sobic002G033900--Sobic001G046900 Sobic005G087000 Sobic005G087000 Sobic002G033900--Sobic005G087000 Sobic002G033900--Sobic004G056900 Sobic002G033900--Sobic010G189300 Sobic002G033900--Sobic010G241000 Sobic002G033900--Sobic003G052500 Sobic002G329600 Sobic002G329600 Sobic001G078000--Sobic002G329600 Sobic001G078000--Sobic006G105900 Sobic002G339200 Sobic002G339200 Sobic001G078000--Sobic002G339200 Sobic001G078000--Sobic010G241000 Sobic009G234600 Sobic009G234600 Sobic001G078000--Sobic009G234600 Sobic005G042000 Sobic005G042000 Sobic001G078000--Sobic005G042000 Sobic006G264201 Sobic006G264201 Sobic001G078000--Sobic006G264201 Sobic006G264900 Sobic006G264900 Sobic001G078000--Sobic006G264900 Sobic007G029300 Sobic007G029300 Sobic001G078000--Sobic007G029300 Sobic002G119500--Sobic002G242000 Sobic002G119500--Sobic001G070500 Sobic002G119500--Sobic004G056900 Sobic009G130700 Sobic009G130700 Sobic002G119500--Sobic009G130700 Sobic002G119500--Sobic002G033900 Sobic001G364100 Sobic001G364100 Sobic002G119500--Sobic001G364100 Sobic002G119500--Sobic001G078000 Sobic002G119500--Sobic001G046900 Sobic002G119500--Sobic002G329600 Sobic004G056900--Sobic002G242000 Sobic001G177000 Sobic001G177000 Sobic004G056900--Sobic001G177000 Sobic004G056900--Sobic001G046900 Sobic004G056900--Sobic001G070500 Sobic004G056900--Sobic002G033900 Sobic004G056900--Sobic007G136900 Sobic004G056900--Sobic006G073500 Sobic004G056900--Sobic010G241000 Sobic004G056900--Sobic003G052500 Sobic004G272600--Sobic001G070500 Sobic004G272600--Sobic010G189300 Sobic004G272600--Sobic003G052500 Sobic004G272600--Sobic002G033900 Sobic004G272600--Sobic006G073500 Sobic004G071800 Sobic004G071800 Sobic004G272600--Sobic004G071800 Sobic004G272600--Sobic004G235200 Sobic008G015100 Sobic008G015100 Sobic004G272600--Sobic008G015100 Sobic004G272600--Sobic009G229700
Octagon: transcription factors


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