Gene annotation
Transcriptome id Sobic.002G119500.4,Sobic.002G119500.3
Synonym Sb02g010190, PSAE-1
Functional annotation Photosystem I reaction center subunit IV (PubMedID : 26186930)
photosystem I reaction center subunit IV A, chloroplast precursor, putative, expressed
UniProt A0A1W0W3H4 , A0A1W0W3D3
Pfam PF02427
Panther DB PTHR34549 PTHR34549:SF2
NCBI CDD -
KEGG Orthology K02693; photosystem I subunit IV
Gene Ontology GO:0015979; photosynthesis GO:0009538photosystem I reaction center GO:0009522photosystem I


Orthologs (automatic annotation)
TAIR AT2G20260 : photosystem I subunit E-2
RAP-DB (Rice) LOC_Os07g25430.1 : photosystem I reaction center subunit IV A, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a045769 , Zm00025a013588
Brachypodium KQK16492
Barley HORVU5Hr1G113900.1 , HORVU5Hr1G113900.3 , HORVU5Hr1G113900.2 , HORVU5Hr1G113900.5 , HORVU5Hr1G113900.4
Wheat TraesCS5B02G496000 , TraesCS5A02G482800 , TraesCS5D02G496400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G119500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
2 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
3 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
4 Sobic.009G130700 lumen 18.3kDa protein(PubMedID : 29017446)@thylakoid lumen protein, putative, expressed -
5 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
6 Sobic.001G364100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
7 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
8 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
9 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
10 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
11 Sobic.007G212400 thylakoid lumenal 19 kDa protein, chloroplast precursor, putative, expressed -
12 Sobic.009G229700 Photosystem I reaction center subunit VI(PubMedID : 26186930)@expressed protein K02695: photosystem I subunit VI
13 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
14 Sobic.002G297300 expressed protein -
15 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
16 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
17 Sobic.003G239300 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
19 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
20 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -


Gene co-expression network
sample Sobic002G119500 Sobic002G119500 Sobic002G242000 Sobic002G242000 Sobic002G119500--Sobic002G242000 Sobic001G070500 Sobic001G070500 Sobic002G119500--Sobic001G070500 Sobic004G056900 Sobic004G056900 Sobic002G119500--Sobic004G056900 Sobic009G130700 Sobic009G130700 Sobic002G119500--Sobic009G130700 Sobic002G033900 Sobic002G033900 Sobic002G119500--Sobic002G033900 Sobic001G364100 Sobic001G364100 Sobic002G119500--Sobic001G364100 Sobic001G078000 Sobic001G078000 Sobic002G119500--Sobic001G078000 Sobic001G046900 Sobic001G046900 Sobic002G119500--Sobic001G046900 Sobic002G329600 Sobic002G329600 Sobic002G119500--Sobic002G329600 Sobic002G242000--Sobic004G056900 Sobic001G177000 Sobic001G177000 Sobic002G242000--Sobic001G177000 Sobic002G242000--Sobic001G046900 Sobic002G242000--Sobic001G070500 Sobic007G136900 Sobic007G136900 Sobic002G242000--Sobic007G136900 Sobic002G030200 Sobic002G030200 Sobic002G242000--Sobic002G030200 Sobic002G242000--Sobic002G033900 Sobic010G241000 Sobic010G241000 Sobic002G242000--Sobic010G241000 Sobic008G063500 Sobic008G063500 Sobic002G242000--Sobic008G063500 Sobic001G070500--Sobic002G033900 Sobic006G073500 Sobic006G073500 Sobic001G070500--Sobic006G073500 Sobic001G070500--Sobic004G056900 Sobic010G189300 Sobic010G189300 Sobic001G070500--Sobic010G189300 Sobic009G229700 Sobic009G229700 Sobic001G070500--Sobic009G229700 Sobic001G070500--Sobic002G242000 Sobic001G070500--Sobic001G046900 Sobic001G070500--Sobic007G136900 Sobic003G052500 Sobic003G052500 Sobic001G070500--Sobic003G052500 Sobic004G056900--Sobic002G242000 Sobic004G056900--Sobic001G177000 Sobic004G056900--Sobic001G046900 Sobic004G056900--Sobic001G070500 Sobic004G056900--Sobic002G033900 Sobic004G056900--Sobic007G136900 Sobic004G056900--Sobic006G073500 Sobic004G056900--Sobic010G241000 Sobic004G056900--Sobic003G052500 Sobic002G297300 Sobic002G297300 Sobic009G130700--Sobic002G297300 Sobic009G179800 Sobic009G179800 Sobic009G130700--Sobic009G179800 Sobic003G433900 Sobic003G433900 Sobic009G130700--Sobic003G433900 Sobic009G091800 Sobic009G091800 Sobic009G130700--Sobic009G091800 Sobic003G246400 Sobic003G246400 Sobic009G130700--Sobic003G246400 Sobic001G382100 Sobic001G382100 Sobic009G130700--Sobic001G382100 Sobic004G238500 Sobic004G238500 Sobic009G130700--Sobic004G238500 Sobic010G022100 Sobic010G022100 Sobic009G130700--Sobic010G022100 Sobic009G130700--Sobic002G329600 Sobic002G033900--Sobic006G073500 Sobic002G033900--Sobic009G229700 Sobic002G033900--Sobic001G070500 Sobic002G033900--Sobic001G046900 Sobic005G087000 Sobic005G087000 Sobic002G033900--Sobic005G087000 Sobic002G033900--Sobic004G056900 Sobic002G033900--Sobic010G189300 Sobic002G033900--Sobic010G241000 Sobic002G033900--Sobic003G052500 Sobic006G234100 Sobic006G234100 Sobic001G364100--Sobic006G234100 Sobic002G339200 Sobic002G339200 Sobic001G364100--Sobic002G339200 Sobic001G364100--Sobic010G241000 Sobic010G109500 Sobic010G109500 Sobic001G364100--Sobic010G109500 Sobic002G264800 Sobic002G264800 Sobic001G364100--Sobic002G264800 Sobic006G136500 Sobic006G136500 Sobic001G364100--Sobic006G136500 Sobic001G364100--Sobic001G078000 Sobic009G234600 Sobic009G234600 Sobic001G364100--Sobic009G234600 Sobic001G364100--Sobic002G329600 Sobic001G078000--Sobic002G329600 Sobic006G105900 Sobic006G105900 Sobic001G078000--Sobic006G105900 Sobic001G078000--Sobic002G339200 Sobic001G078000--Sobic010G241000 Sobic001G078000--Sobic009G234600 Sobic005G042000 Sobic005G042000 Sobic001G078000--Sobic005G042000 Sobic006G264201 Sobic006G264201 Sobic001G078000--Sobic006G264201 Sobic006G264900 Sobic006G264900 Sobic001G078000--Sobic006G264900 Sobic007G029300 Sobic007G029300 Sobic001G078000--Sobic007G029300 Sobic002G352100 Sobic002G352100 Sobic001G046900--Sobic002G352100 Sobic001G046900--Sobic004G056900 Sobic001G046900--Sobic007G136900 Sobic001G046900--Sobic005G087000 Sobic001G046900--Sobic006G073500 Sobic001G046900--Sobic002G033900 Sobic001G046900--Sobic001G177000 Sobic004G235200 Sobic004G235200 Sobic001G046900--Sobic004G235200 Sobic001G046900--Sobic002G242000 Sobic002G329600--Sobic006G264201 Sobic002G329600--Sobic002G339200 Sobic002G329600--Sobic001G078000 Sobic002G329600--Sobic010G241000 Sobic002G329600--Sobic009G234600 Sobic002G329600--Sobic007G029300 Sobic002G329600--Sobic002G297300 Sobic002G329600--Sobic002G030200 Sobic001G448400 Sobic001G448400 Sobic002G329600--Sobic001G448400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.