Gene annotation
Transcriptome id Sobic.009G110200.1
Synonym ATL3, Sb09g017860
Functional annotation RING-H2 finger protein, putative, expressed
UniProt C5YWS6
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF147
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G72310 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g29676.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a036960
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G086300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ANTH domain containing protein, expressed -
2 Sobic.008G135600 osmotin, putative, expressed -
3 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
4 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
5 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
6 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
7 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
8 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
9 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
10 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
11 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
12 Sobic.003G400200 plant-specific domain TIGR01615 family protein, expressed -
13 Sobic.006G026800 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
14 Sobic.010G179800 OsFBK16 - F-box domain and kelch repeat containing protein, expressed -
15 Sobic.004G279700 expressed protein -
16 Sobic.004G170100 - -
17 Sobic.004G071750 - -
18 Sobic.006G241400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
19 Sobic.003G138550 - -
20 Sobic.010G146100 aquaporin protein, putative, expressed K09873: aquaporin TIP


Gene co-expression network
sample Sobic009G110200 Sobic009G110200 Sobic005G086300 Sobic005G086300 Sobic009G110200--Sobic005G086300 Sobic008G135600 Sobic008G135600 Sobic009G110200--Sobic008G135600 Sobic001G160700 Sobic001G160700 Sobic009G110200--Sobic001G160700 Sobic001G169200 Sobic001G169200 Sobic005G086300--Sobic001G169200 Sobic005G086300--Sobic009G110200 Sobic009G049850 Sobic009G049850 Sobic005G086300--Sobic009G049850 Sobic006G026800 Sobic006G026800 Sobic005G086300--Sobic006G026800 Sobic010G179800 Sobic010G179800 Sobic005G086300--Sobic010G179800 Sobic004G071750 Sobic004G071750 Sobic005G086300--Sobic004G071750 Sobic005G086300--Sobic001G160700 Sobic004G279700 Sobic004G279700 Sobic008G135600--Sobic004G279700 Sobic008G135600--Sobic009G110200 Sobic003G400200 Sobic003G400200 Sobic008G135600--Sobic003G400200 Sobic006G241400 Sobic006G241400 Sobic008G135600--Sobic006G241400 Sobic003G331600 Sobic003G331600 Sobic008G135600--Sobic003G331600 Sobic004G293100 Sobic004G293100 Sobic008G135600--Sobic004G293100 Sobic006G206000 Sobic006G206000 Sobic008G135600--Sobic006G206000 Sobic008G135600--Sobic010G179800 Sobic006G269250 Sobic006G269250 Sobic008G135600--Sobic006G269250 Sobic001G160700--Sobic001G160700 Sobic001G160700--Sobic004G071750
Octagon: transcription factors


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