Gene annotation
Transcriptome id Sobic.006G241400.1
Synonym Sb06g030750
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
expressed protein
UniProt C5Y937
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os04g55610.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.006G241400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G279700 expressed protein -
2 Sobic.006G241350 - -
3 Sobic.003G400200 plant-specific domain TIGR01615 family protein, expressed -
4 Sobic.006G241600 expressed protein -
5 Sobic.002G421600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
6 Sobic.007G126100 trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
7 Sobic.008G036900 MYB family transcription factor, putative, expressed -
8 Sobic.003G395400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@BTBZ2 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed -
9 Sobic.002G254200 expressed protein -
10 Sobic.003G123300 zinc finger, C3HC4 type domain containing protein, expressed K16282: E3 ubiquitin-protein ligase RHA2
11 Sobic.001G225200 expressed protein -
12 Sobic.001G225600 expressed protein -
13 Sobic.002G367700 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
14 Sobic.003G290300 expressed protein -
15 Sobic.001G225300 - -
16 Sobic.006G206000 WRKY68, expressed -
17 Sobic.006G191600 expressed protein -
18 Sobic.010G003700 scarecrow, putative, expressed -
19 Sobic.004G325900 trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
20 Sobic.001G311000 expansin precursor, putative, expressed -


Gene co-expression network
sample Sobic006G241400 Sobic006G241400 Sobic004G279700 Sobic004G279700 Sobic006G241400--Sobic004G279700 Sobic006G241350 Sobic006G241350 Sobic006G241400--Sobic006G241350 Sobic003G400200 Sobic003G400200 Sobic006G241400--Sobic003G400200 Sobic006G241600 Sobic006G241600 Sobic006G241400--Sobic006G241600 Sobic002G421600 Sobic002G421600 Sobic006G241400--Sobic002G421600 Sobic007G126100 Sobic007G126100 Sobic006G241400--Sobic007G126100 Sobic008G036900 Sobic008G036900 Sobic006G241400--Sobic008G036900 Sobic003G395400 Sobic003G395400 Sobic006G241400--Sobic003G395400 Sobic002G254200 Sobic002G254200 Sobic006G241400--Sobic002G254200 Sobic004G279700--Sobic003G400200 Sobic004G279700--Sobic006G241400 Sobic004G279700--Sobic002G254200 Sobic004G279700--Sobic006G241350 Sobic003G290300 Sobic003G290300 Sobic004G279700--Sobic003G290300 Sobic004G279700--Sobic002G421600 Sobic001G225200 Sobic001G225200 Sobic004G279700--Sobic001G225200 Sobic001G225300 Sobic001G225300 Sobic004G279700--Sobic001G225300 Sobic006G191600 Sobic006G191600 Sobic004G279700--Sobic006G191600 Sobic006G241350--Sobic006G241400 Sobic006G241350--Sobic004G279700 Sobic004G325900 Sobic004G325900 Sobic006G241350--Sobic004G325900 Sobic006G241350--Sobic006G241600 Sobic007G028700 Sobic007G028700 Sobic006G241350--Sobic007G028700 Sobic002G367700 Sobic002G367700 Sobic006G241350--Sobic002G367700 Sobic001G078900 Sobic001G078900 Sobic006G241350--Sobic001G078900 Sobic003G123300 Sobic003G123300 Sobic006G241350--Sobic003G123300 Sobic001G465100 Sobic001G465100 Sobic006G241350--Sobic001G465100 Sobic003G400200--Sobic004G279700 Sobic006G269250 Sobic006G269250 Sobic003G400200--Sobic006G269250 Sobic003G400200--Sobic006G241400 Sobic003G400200--Sobic001G225200 Sobic003G400200--Sobic002G421600 Sobic001G225600 Sobic001G225600 Sobic003G400200--Sobic001G225600 Sobic003G400200--Sobic001G225300 Sobic003G400200--Sobic002G254200 Sobic003G400200--Sobic008G036900 Sobic006G241600--Sobic006G241400 Sobic006G241600--Sobic006G241350 Sobic006G241600--Sobic007G126100 Sobic006G241600--Sobic002G421600 Sobic003G000800 Sobic003G000800 Sobic006G241600--Sobic003G000800 Sobic001G247400 Sobic001G247400 Sobic006G241600--Sobic001G247400 Sobic001G032100 Sobic001G032100 Sobic006G241600--Sobic001G032100 Sobic001G149700 Sobic001G149700 Sobic006G241600--Sobic001G149700 Sobic001G225100 Sobic001G225100 Sobic006G241600--Sobic001G225100 Sobic002G421600--Sobic007G126100 Sobic006G269200 Sobic006G269200 Sobic002G421600--Sobic006G269200 Sobic007G177100 Sobic007G177100 Sobic002G421600--Sobic007G177100 Sobic002G421600--Sobic002G254200 Sobic003G034400 Sobic003G034400 Sobic002G421600--Sobic003G034400 Sobic003G293900 Sobic003G293900 Sobic002G421600--Sobic003G293900 Sobic002G421600--Sobic001G225200 Sobic006G047000 Sobic006G047000 Sobic002G421600--Sobic006G047000 Sobic002G421600--Sobic006G241600 Sobic007G126100--Sobic007G177100 Sobic004G212900 Sobic004G212900 Sobic007G126100--Sobic004G212900 Sobic007G126100--Sobic002G421600 Sobic007G126100--Sobic002G254200 Sobic009G016201 Sobic009G016201 Sobic007G126100--Sobic009G016201 Sobic009G159200 Sobic009G159200 Sobic007G126100--Sobic009G159200 Sobic004G172700 Sobic004G172700 Sobic007G126100--Sobic004G172700 Sobic006G157500 Sobic006G157500 Sobic007G126100--Sobic006G157500 Sobic002G282400 Sobic002G282400 Sobic007G126100--Sobic002G282400 Sobic010G003700 Sobic010G003700 Sobic008G036900--Sobic010G003700 Sobic008G036900--Sobic001G225200 Sobic001G328800 Sobic001G328800 Sobic008G036900--Sobic001G328800 Sobic006G206000 Sobic006G206000 Sobic008G036900--Sobic006G206000 Sobic008G036900--Sobic006G157500 Sobic008G036900--Sobic006G241400 Sobic001G282100 Sobic001G282100 Sobic008G036900--Sobic001G282100 Sobic008G036900--Sobic009G016201 Sobic008G036900--Sobic007G126100 Sobic003G395400--Sobic001G225200 Sobic003G395400--Sobic007G126100 Sobic003G395400--Sobic006G157500 Sobic003G395400--Sobic006G206000 Sobic003G360000 Sobic003G360000 Sobic003G395400--Sobic003G360000 Sobic003G395400--Sobic002G254200 Sobic007G197600 Sobic007G197600 Sobic003G395400--Sobic007G197600 Sobic003G265200 Sobic003G265200 Sobic003G395400--Sobic003G265200 Sobic002G330000 Sobic002G330000 Sobic003G395400--Sobic002G330000 Sobic002G254200--Sobic001G225200 Sobic002G254200--Sobic001G225300 Sobic002G254200--Sobic006G269200 Sobic006G154500 Sobic006G154500 Sobic002G254200--Sobic006G154500 Sobic002G254200--Sobic007G177100 Sobic002G254200--Sobic006G191600 Sobic002G254200--Sobic009G159200 Sobic002G254200--Sobic006G157500 Sobic002G254200--Sobic007G126100
Octagon: transcription factors


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