Gene annotation
Transcriptome id Sobic.002G421600.2,Sobic.002G421600.1
Synonym Sb02g043280, ACHT4
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
thioredoxin, putative, expressed
UniProt A0A1B6QGC0 , A0A1B6QGE5
Pfam PF00085
Panther DB PTHR10438 PTHR10438:SF245 PTHR10438 PTHR10438:SF277
NCBI CDD KOG0907; Thioredoxin
KEGG Orthology -
Gene Ontology GO:0015035; protein disulfide oxidoreductase activity GO:0006662glycerol ether metabolic process


Orthologs (automatic annotation)
TAIR AT1G08570 : atypical CYS HIS rich thioredoxin 4
RAP-DB (Rice) LOC_Os07g48510.1 : thioredoxin, putative, expressed
MaizeGDB (Corn) Zm00025a049195 , Zm00025a026747
Brachypodium KQK14585
Barley HORVU2Hr1G017310.1
Wheat TraesCS2B02G118100 , TraesCS2A02G100900 , TraesCS2D02G100500
Populus -


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cDNA sequences
Sobic.002G421600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G126100 trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
2 Sobic.006G269200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@stem-specific protein TSJT1, putative, expressed -
3 Sobic.007G177100 "Syntelog of ZmMYB42, bind to the COMT1, CSE, 4CL2, F5H, and SbMYB42 promroter region"(PubMedID : 30387379)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
4 Sobic.002G254200 expressed protein -
5 Sobic.003G034400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger/CCCH transcription factor, putative, expressed -
6 Sobic.003G293900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@plant-specific domain TIGR01615 family protein, expressed -
7 Sobic.001G225200 expressed protein -
8 Sobic.006G047000 CBS domain containing membrane protein, putative, expressed -
9 Sobic.006G241600 expressed protein -
10 Sobic.003G400200 plant-specific domain TIGR01615 family protein, expressed -
11 Sobic.009G100800 expressed protein -
12 Sobic.004G279700 expressed protein -
13 Sobic.003G402300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@P21-Rho-binding domain containing protein, putative, expressed -
14 Sobic.001G311000 expansin precursor, putative, expressed -
15 Sobic.003G123300 zinc finger, C3HC4 type domain containing protein, expressed K16282: E3 ubiquitin-protein ligase RHA2
16 Sobic.004G212900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@B4-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
17 Sobic.006G241400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
18 Sobic.006G157500 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
19 Sobic.006G240500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
20 Sobic.010G030401 - -


Gene co-expression network
sample Sobic002G421600 Sobic002G421600 Sobic007G126100 Sobic007G126100 Sobic002G421600--Sobic007G126100 Sobic006G269200 Sobic006G269200 Sobic002G421600--Sobic006G269200 Sobic007G177100 Sobic007G177100 Sobic002G421600--Sobic007G177100 Sobic002G254200 Sobic002G254200 Sobic002G421600--Sobic002G254200 Sobic003G034400 Sobic003G034400 Sobic002G421600--Sobic003G034400 Sobic003G293900 Sobic003G293900 Sobic002G421600--Sobic003G293900 Sobic001G225200 Sobic001G225200 Sobic002G421600--Sobic001G225200 Sobic006G047000 Sobic006G047000 Sobic002G421600--Sobic006G047000 Sobic006G241600 Sobic006G241600 Sobic002G421600--Sobic006G241600 Sobic007G126100--Sobic007G177100 Sobic004G212900 Sobic004G212900 Sobic007G126100--Sobic004G212900 Sobic007G126100--Sobic002G421600 Sobic007G126100--Sobic002G254200 Sobic009G016201 Sobic009G016201 Sobic007G126100--Sobic009G016201 Sobic009G159200 Sobic009G159200 Sobic007G126100--Sobic009G159200 Sobic004G172700 Sobic004G172700 Sobic007G126100--Sobic004G172700 Sobic006G157500 Sobic006G157500 Sobic007G126100--Sobic006G157500 Sobic002G282400 Sobic002G282400 Sobic007G126100--Sobic002G282400 Sobic006G269200--Sobic002G254200 Sobic009G030100 Sobic009G030100 Sobic006G269200--Sobic009G030100 Sobic006G269200--Sobic002G421600 Sobic009G064000 Sobic009G064000 Sobic006G269200--Sobic009G064000 Sobic006G269200--Sobic001G225200 Sobic010G030401 Sobic010G030401 Sobic006G269200--Sobic010G030401 Sobic001G225300 Sobic001G225300 Sobic006G269200--Sobic001G225300 Sobic006G269200--Sobic007G177100 Sobic006G269200--Sobic007G126100 Sobic007G177100--Sobic009G159200 Sobic007G177100--Sobic007G126100 Sobic007G177100--Sobic004G212900 Sobic007G177100--Sobic006G157500 Sobic004G166400 Sobic004G166400 Sobic007G177100--Sobic004G166400 Sobic007G177100--Sobic010G030401 Sobic007G177100--Sobic002G254200 Sobic007G197600 Sobic007G197600 Sobic007G177100--Sobic007G197600 Sobic003G360000 Sobic003G360000 Sobic007G177100--Sobic003G360000 Sobic002G254200--Sobic001G225200 Sobic002G254200--Sobic001G225300 Sobic002G254200--Sobic006G269200 Sobic006G154500 Sobic006G154500 Sobic002G254200--Sobic006G154500 Sobic002G254200--Sobic007G177100 Sobic006G191600 Sobic006G191600 Sobic002G254200--Sobic006G191600 Sobic002G254200--Sobic009G159200 Sobic002G254200--Sobic006G157500 Sobic002G254200--Sobic007G126100 Sobic003G034400--Sobic002G421600 Sobic003G123300 Sobic003G123300 Sobic003G034400--Sobic003G123300 Sobic003G034400--Sobic006G269200 Sobic009G100800 Sobic009G100800 Sobic003G034400--Sobic009G100800 Sobic003G034400--Sobic006G047000 Sobic001G078200 Sobic001G078200 Sobic003G034400--Sobic001G078200 Sobic003G034400--Sobic009G064000 Sobic005G085600 Sobic005G085600 Sobic003G034400--Sobic005G085600 Sobic003G034400--Sobic003G293900 Sobic003G296600 Sobic003G296600 Sobic003G293900--Sobic003G296600 Sobic003G293900--Sobic009G030100 Sobic001G032100 Sobic001G032100 Sobic003G293900--Sobic001G032100 Sobic006G194150 Sobic006G194150 Sobic003G293900--Sobic006G194150 Sobic003G293900--Sobic002G421600 Sobic001G247400 Sobic001G247400 Sobic003G293900--Sobic001G247400 Sobic002G330700 Sobic002G330700 Sobic003G293900--Sobic002G330700 Sobic001G311000 Sobic001G311000 Sobic003G293900--Sobic001G311000 Sobic003G293900--Sobic007G126100 Sobic001G225200--Sobic001G225300 Sobic001G225200--Sobic002G254200 Sobic001G225200--Sobic006G157500 Sobic001G225200--Sobic006G191600 Sobic003G406900 Sobic003G406900 Sobic001G225200--Sobic003G406900 Sobic001G225200--Sobic006G269200 Sobic001G225200--Sobic007G177100 Sobic001G225200--Sobic006G154500 Sobic003G265200 Sobic003G265200 Sobic001G225200--Sobic003G265200 Sobic001G234300 Sobic001G234300 Sobic006G047000--Sobic001G234300 Sobic006G047000--Sobic002G421600 Sobic006G047000--Sobic007G177100 Sobic006G047000--Sobic007G126100 Sobic006G047000--Sobic010G030401 Sobic010G250600 Sobic010G250600 Sobic006G047000--Sobic010G250600 Sobic006G159300 Sobic006G159300 Sobic006G047000--Sobic006G159300 Sobic001G321500 Sobic001G321500 Sobic006G047000--Sobic001G321500 Sobic010G194300 Sobic010G194300 Sobic006G047000--Sobic010G194300 Sobic006G241400 Sobic006G241400 Sobic006G241600--Sobic006G241400 Sobic006G241350 Sobic006G241350 Sobic006G241600--Sobic006G241350 Sobic006G241600--Sobic007G126100 Sobic006G241600--Sobic002G421600 Sobic003G000800 Sobic003G000800 Sobic006G241600--Sobic003G000800 Sobic006G241600--Sobic001G247400 Sobic006G241600--Sobic001G032100 Sobic001G149700 Sobic001G149700 Sobic006G241600--Sobic001G149700 Sobic001G225100 Sobic001G225100 Sobic006G241600--Sobic001G225100
Octagon: transcription factors


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