Gene annotation
Transcriptome id Sobic.003G402300.1
Synonym RIC4, Sb03g043840
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
P21-Rho-binding domain containing protein, putative, expressed
UniProt C5XG85
Pfam PF00786
Panther DB PTHR23177 PTHR23177:SF23
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G33460 : ROP-interactive CRIB motif-containing protein 1
RAP-DB (Rice) LOC_Os01g68890.1 : P21-Rho-binding domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026289 , Zm00025a039338
Brachypodium KQK11209
Barley HORVU3Hr1G093570.3 , HORVU3Hr1G093570.2 , HORVU3Hr1G093570.5 , HORVU3Hr1G093570.4 , HORVU3Hr1G093570.6
Wheat TraesCS3B02G459600 , TraesCS3A02G423700 , TraesCS3A02G423700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G157500 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
2 Sobic.007G177100 "Syntelog of ZmMYB42, bind to the COMT1, CSE, 4CL2, F5H, and SbMYB42 promroter region"(PubMedID : 30387379)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
3 Sobic.004G164500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
4 Sobic.002G353800 homeobox domain containing protein, expressed K09338: homeobox-leucine zipper protein
5 Sobic.002G339100 similar to Putative organic cation transporter(PubMedID : 24655390)@similar to Putative organic cation transporter(PubMedID : 24655390)@organic cation transporter-related, putative, expressed -
6 Sobic.001G311000 expansin precursor, putative, expressed -
7 Sobic.009G159200 guanylyl cyclase, putative, expressed -
8 Sobic.007G090463 - K08235: xyloglucan:xyloglucosyl transferase
9 Sobic.001G372100 beta-amylase 3(PubMedID : 26465154)@beta-amylase 3(PubMedID : 26465154)@beta-amylase, putative, expressed -
10 Sobic.004G212900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@B4-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
11 Sobic.006G191600 expressed protein -
12 Sobic.002G254200 expressed protein -
13 Sobic.002G421600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
14 Sobic.003G260300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.002G291900 RING-H2 finger protein, putative, expressed -
16 Sobic.002G205300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
17 Sobic.007G126100 trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
18 Sobic.010G161700 peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.004G301000 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
20 Sobic.001G009500 - -


Gene co-expression network
sample Sobic003G402300 Sobic003G402300 Sobic006G157500 Sobic006G157500 Sobic003G402300--Sobic006G157500 Sobic007G177100 Sobic007G177100 Sobic003G402300--Sobic007G177100 Sobic004G164500 Sobic004G164500 Sobic003G402300--Sobic004G164500 Sobic002G353800 Sobic002G353800 Sobic003G402300--Sobic002G353800 Sobic002G339100 Sobic002G339100 Sobic003G402300--Sobic002G339100 Sobic001G311000 Sobic001G311000 Sobic003G402300--Sobic001G311000 Sobic009G159200 Sobic009G159200 Sobic003G402300--Sobic009G159200 Sobic007G090463 Sobic007G090463 Sobic003G402300--Sobic007G090463 Sobic001G372100 Sobic001G372100 Sobic003G402300--Sobic001G372100 Sobic009G168900 Sobic009G168900 Sobic006G157500--Sobic009G168900 Sobic003G265200 Sobic003G265200 Sobic006G157500--Sobic003G265200 Sobic006G157500--Sobic002G339100 Sobic003G260300 Sobic003G260300 Sobic006G157500--Sobic003G260300 Sobic001G477600 Sobic001G477600 Sobic006G157500--Sobic001G477600 Sobic001G318700 Sobic001G318700 Sobic006G157500--Sobic001G318700 Sobic009G184000 Sobic009G184000 Sobic006G157500--Sobic009G184000 Sobic004G109900 Sobic004G109900 Sobic006G157500--Sobic004G109900 Sobic001G112200 Sobic001G112200 Sobic006G157500--Sobic001G112200 Sobic007G177100--Sobic009G159200 Sobic007G126100 Sobic007G126100 Sobic007G177100--Sobic007G126100 Sobic004G212900 Sobic004G212900 Sobic007G177100--Sobic004G212900 Sobic007G177100--Sobic006G157500 Sobic004G166400 Sobic004G166400 Sobic007G177100--Sobic004G166400 Sobic010G030401 Sobic010G030401 Sobic007G177100--Sobic010G030401 Sobic002G254200 Sobic002G254200 Sobic007G177100--Sobic002G254200 Sobic007G197600 Sobic007G197600 Sobic007G177100--Sobic007G197600 Sobic003G360000 Sobic003G360000 Sobic007G177100--Sobic003G360000 Sobic001G471900 Sobic001G471900 Sobic004G164500--Sobic001G471900 Sobic004G164500--Sobic001G311000 Sobic009G065000 Sobic009G065000 Sobic004G164500--Sobic009G065000 Sobic008G106800 Sobic008G106800 Sobic004G164500--Sobic008G106800 Sobic001G056700 Sobic001G056700 Sobic004G164500--Sobic001G056700 Sobic010G154150 Sobic010G154150 Sobic004G164500--Sobic010G154150 Sobic006G257900 Sobic006G257900 Sobic004G164500--Sobic006G257900 Sobic010G228600 Sobic010G228600 Sobic004G164500--Sobic010G228600 Sobic004G164500--Sobic007G177100 Sobic009G075900 Sobic009G075900 Sobic002G353800--Sobic009G075900 Sobic003G303100 Sobic003G303100 Sobic002G353800--Sobic003G303100 Sobic004G203700 Sobic004G203700 Sobic002G353800--Sobic004G203700 Sobic002G353800--Sobic009G159200 Sobic001G004800 Sobic001G004800 Sobic002G353800--Sobic001G004800 Sobic002G353800--Sobic001G372100 Sobic001G070800 Sobic001G070800 Sobic002G353800--Sobic001G070800 Sobic008G050600 Sobic008G050600 Sobic002G353800--Sobic008G050600 Sobic003G345100 Sobic003G345100 Sobic002G353800--Sobic003G345100 Sobic002G339100--Sobic003G260300 Sobic002G339100--Sobic006G157500 Sobic002G339100--Sobic003G265200 Sobic001G502400 Sobic001G502400 Sobic002G339100--Sobic001G502400 Sobic002G339100--Sobic009G184000 Sobic003G432700 Sobic003G432700 Sobic002G339100--Sobic003G432700 Sobic002G339100--Sobic001G318700 Sobic006G075400 Sobic006G075400 Sobic002G339100--Sobic006G075400 Sobic006G007900 Sobic006G007900 Sobic002G339100--Sobic006G007900 Sobic001G311000--Sobic004G164500 Sobic001G311000--Sobic009G065000 Sobic006G191600 Sobic006G191600 Sobic001G311000--Sobic006G191600 Sobic001G311000--Sobic007G177100 Sobic001G311000--Sobic003G402300 Sobic001G311000--Sobic007G126100 Sobic001G311000--Sobic008G106800 Sobic001G311000--Sobic006G257900 Sobic003G293900 Sobic003G293900 Sobic001G311000--Sobic003G293900 Sobic009G159200--Sobic007G197600 Sobic009G159200--Sobic007G177100 Sobic009G159200--Sobic002G353800 Sobic009G159200--Sobic001G070800 Sobic009G159200--Sobic006G157500 Sobic009G159200--Sobic009G075900 Sobic003G379800 Sobic003G379800 Sobic009G159200--Sobic003G379800 Sobic003G393700 Sobic003G393700 Sobic009G159200--Sobic003G393700 Sobic009G159200--Sobic004G203700 Sobic007G090463--Sobic002G339100 Sobic001G431500 Sobic001G431500 Sobic007G090463--Sobic001G431500 Sobic007G090463--Sobic006G157500 Sobic001G505100 Sobic001G505100 Sobic007G090463--Sobic001G505100 Sobic007G090463--Sobic003G402300 Sobic007G090463--Sobic003G260300 Sobic003G049700 Sobic003G049700 Sobic007G090463--Sobic003G049700 Sobic007G192300 Sobic007G192300 Sobic007G090463--Sobic007G192300 Sobic004G345500 Sobic004G345500 Sobic007G090463--Sobic004G345500 Sobic001G372100--Sobic009G168900 Sobic001G372100--Sobic006G157500 Sobic001G372100--Sobic001G112200 Sobic001G138600 Sobic001G138600 Sobic001G372100--Sobic001G138600 Sobic001G372100--Sobic001G318700 Sobic001G372100--Sobic009G184000 Sobic003G369100 Sobic003G369100 Sobic001G372100--Sobic003G369100 Sobic001G372100--Sobic003G260300 Sobic003G362700 Sobic003G362700 Sobic001G372100--Sobic003G362700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.