Gene annotation
Transcriptome id Sobic.001G311000.1,Sobic.001G311000.2,Sobic.001G311000.3
Synonym EXLA1, ATEXPL1, ATHEXPBETA2.1, EXPL1, ATEXLA1, Sb01g030330
Functional annotation expansin precursor, putative, expressed
UniProt A0A1B6QM41 , A0A1Z5S8F7 , A0A1Z5S8G0
Pfam PF01357 PF03330 PF03330 PF01357
Panther DB PTHR31692 PTHR31692:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G45970 : expansin-like A1
RAP-DB (Rice) LOC_Os10g39640.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a053367 , Zm00025a003203 , Zm00025a000460
Brachypodium KQK23802 , KQK23803
Barley HORVU4Hr1G081800.2 , HORVU4Hr1G081800.7 , HORVU4Hr1G081800.9 , HORVU4Hr1G081800.8 , HORVU4Hr1G081990.3 , HORVU4Hr1G081990.2 , HORVU4Hr1G081990.1 , HORVU4Hr1G081990.6 , HORVU4Hr1G081990.5 , HORVU4Hr1G081990.4 , HORVU4Hr1G081990.9 , HORVU4Hr1G081990.8 , HORVU4Hr1G081800.11 , HORVU4Hr1G081800.10 , HORVU4Hr1G081800.13 , HORVU4Hr1G081800.12 , HORVU4Hr1G081800.1 , HORVU4Hr1G081990.13 , HORVU4Hr1G081990.12 , HORVU4Hr1G081990.11 , HORVU4Hr1G081990.10 , HORVU4Hr1G081990.14 , HORVU4Hr1G081800.5 , HORVU4Hr1G081800.4 , HORVU4Hr1G081800.6
Wheat TraesCS5A02G499100 , TraesCS5A02G499300 , TraesCS4B02G327200 , TraesCS4D02G323600 , TraesCS4B02G326900 , TraesCS4B02G327100 , TraesCS5A02G498900 , TraesCS7B02G469100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G164500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
2 Sobic.009G065000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
3 Sobic.006G191600 expressed protein -
4 Sobic.007G177100 "Syntelog of ZmMYB42, bind to the COMT1, CSE, 4CL2, F5H, and SbMYB42 promroter region"(PubMedID : 30387379)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.003G402300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@P21-Rho-binding domain containing protein, putative, expressed -
6 Sobic.007G126100 trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
7 Sobic.008G106800 isoflavone reductase, putative, expressed -
8 Sobic.006G257900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
9 Sobic.003G293900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@plant-specific domain TIGR01615 family protein, expressed -
10 Sobic.001G247400 plant-specific domain TIGR01615 family protein, expressed -
11 Sobic.001G471900 C2 domain containing protein, putative, expressed -
12 Sobic.001G225100 expressed protein -
13 Sobic.002G421600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
14 Sobic.003G406900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
15 Sobic.001G230700 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
16 Sobic.001G032100 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
17 Sobic.003G296600 coiled-coil domain-containing protein 25, putative, expressed -
18 Sobic.001G056700 "O2(rtholog in meize:Hartings et al., 1989)"(PubMedID : 31659831)@bZIP transcription factor domain containing protein, expressed -
19 Sobic.001G076000 PHLOEM 2-LIKE A10, putative, expressed -
20 Sobic.001G082400 cytochrome P450, putative, expressed -


Gene co-expression network
sample Sobic001G311000 Sobic001G311000 Sobic004G164500 Sobic004G164500 Sobic001G311000--Sobic004G164500 Sobic009G065000 Sobic009G065000 Sobic001G311000--Sobic009G065000 Sobic006G191600 Sobic006G191600 Sobic001G311000--Sobic006G191600 Sobic007G177100 Sobic007G177100 Sobic001G311000--Sobic007G177100 Sobic003G402300 Sobic003G402300 Sobic001G311000--Sobic003G402300 Sobic007G126100 Sobic007G126100 Sobic001G311000--Sobic007G126100 Sobic008G106800 Sobic008G106800 Sobic001G311000--Sobic008G106800 Sobic006G257900 Sobic006G257900 Sobic001G311000--Sobic006G257900 Sobic003G293900 Sobic003G293900 Sobic001G311000--Sobic003G293900 Sobic001G471900 Sobic001G471900 Sobic004G164500--Sobic001G471900 Sobic004G164500--Sobic001G311000 Sobic004G164500--Sobic009G065000 Sobic004G164500--Sobic008G106800 Sobic001G056700 Sobic001G056700 Sobic004G164500--Sobic001G056700 Sobic010G154150 Sobic010G154150 Sobic004G164500--Sobic010G154150 Sobic004G164500--Sobic006G257900 Sobic010G228600 Sobic010G228600 Sobic004G164500--Sobic010G228600 Sobic004G164500--Sobic007G177100 Sobic009G065000--Sobic004G164500 Sobic009G065000--Sobic001G311000 Sobic001G206000 Sobic001G206000 Sobic009G065000--Sobic001G206000 Sobic009G065000--Sobic008G106800 Sobic009G065000--Sobic006G257900 Sobic009G065000--Sobic001G471900 Sobic009G065000--Sobic007G177100 Sobic009G065000--Sobic010G228600 Sobic003G116700 Sobic003G116700 Sobic009G065000--Sobic003G116700 Sobic002G254200 Sobic002G254200 Sobic006G191600--Sobic002G254200 Sobic001G225200 Sobic001G225200 Sobic006G191600--Sobic001G225200 Sobic003G406900 Sobic003G406900 Sobic006G191600--Sobic003G406900 Sobic006G191600--Sobic001G311000 Sobic001G082400 Sobic001G082400 Sobic006G191600--Sobic001G082400 Sobic003G048000 Sobic003G048000 Sobic006G191600--Sobic003G048000 Sobic006G157500 Sobic006G157500 Sobic006G191600--Sobic006G157500 Sobic006G191600--Sobic004G164500 Sobic006G191600--Sobic003G402300 Sobic009G159200 Sobic009G159200 Sobic007G177100--Sobic009G159200 Sobic007G177100--Sobic007G126100 Sobic004G212900 Sobic004G212900 Sobic007G177100--Sobic004G212900 Sobic007G177100--Sobic006G157500 Sobic004G166400 Sobic004G166400 Sobic007G177100--Sobic004G166400 Sobic010G030401 Sobic010G030401 Sobic007G177100--Sobic010G030401 Sobic007G177100--Sobic002G254200 Sobic007G197600 Sobic007G197600 Sobic007G177100--Sobic007G197600 Sobic003G360000 Sobic003G360000 Sobic007G177100--Sobic003G360000 Sobic003G402300--Sobic006G157500 Sobic003G402300--Sobic007G177100 Sobic003G402300--Sobic004G164500 Sobic002G353800 Sobic002G353800 Sobic003G402300--Sobic002G353800 Sobic002G339100 Sobic002G339100 Sobic003G402300--Sobic002G339100 Sobic003G402300--Sobic001G311000 Sobic003G402300--Sobic009G159200 Sobic007G090463 Sobic007G090463 Sobic003G402300--Sobic007G090463 Sobic001G372100 Sobic001G372100 Sobic003G402300--Sobic001G372100 Sobic007G126100--Sobic007G177100 Sobic007G126100--Sobic004G212900 Sobic002G421600 Sobic002G421600 Sobic007G126100--Sobic002G421600 Sobic007G126100--Sobic002G254200 Sobic009G016201 Sobic009G016201 Sobic007G126100--Sobic009G016201 Sobic007G126100--Sobic009G159200 Sobic004G172700 Sobic004G172700 Sobic007G126100--Sobic004G172700 Sobic007G126100--Sobic006G157500 Sobic002G282400 Sobic002G282400 Sobic007G126100--Sobic002G282400 Sobic008G106800--Sobic004G164500 Sobic008G106800--Sobic001G471900 Sobic008G106800--Sobic001G056700 Sobic008G106800--Sobic009G065000 Sobic003G273100 Sobic003G273100 Sobic008G106800--Sobic003G273100 Sobic003G137400 Sobic003G137400 Sobic008G106800--Sobic003G137400 Sobic008G106800--Sobic001G311000 Sobic002G278300 Sobic002G278300 Sobic008G106800--Sobic002G278300 Sobic001G230700 Sobic001G230700 Sobic008G106800--Sobic001G230700 Sobic010G071200 Sobic010G071200 Sobic006G257900--Sobic010G071200 Sobic001G149700 Sobic001G149700 Sobic006G257900--Sobic001G149700 Sobic001G478300 Sobic001G478300 Sobic006G257900--Sobic001G478300 Sobic006G257900--Sobic010G154150 Sobic007G063200 Sobic007G063200 Sobic006G257900--Sobic007G063200 Sobic004G231400 Sobic004G231400 Sobic006G257900--Sobic004G231400 Sobic010G055500 Sobic010G055500 Sobic006G257900--Sobic010G055500 Sobic004G188300 Sobic004G188300 Sobic006G257900--Sobic004G188300 Sobic006G257900--Sobic004G164500 Sobic003G296600 Sobic003G296600 Sobic003G293900--Sobic003G296600 Sobic009G030100 Sobic009G030100 Sobic003G293900--Sobic009G030100 Sobic001G032100 Sobic001G032100 Sobic003G293900--Sobic001G032100 Sobic006G194150 Sobic006G194150 Sobic003G293900--Sobic006G194150 Sobic003G293900--Sobic002G421600 Sobic001G247400 Sobic001G247400 Sobic003G293900--Sobic001G247400 Sobic002G330700 Sobic002G330700 Sobic003G293900--Sobic002G330700 Sobic003G293900--Sobic001G311000 Sobic003G293900--Sobic007G126100
Octagon: transcription factors


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