Gene annotation
Transcriptome id Sobic.009G065000.1
Synonym AXR3, SbIAA19, auxin/indole-3-acetic acid (Aux/IAA), IAA17, Sb09g005430
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments" (PubMedID : 20499123)
OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed
UniProt C5Z169
Pfam PF02309
Panther DB PTHR31734 PTHR31734:SF34
NCBI CDD -
KEGG Orthology K14484; auxin-responsive protein IAA
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G04250 : AUX/IAA transcriptional regulator family protein
RAP-DB (Rice) LOC_Os05g08570.2 : OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed
MaizeGDB (Corn) Zm00025a023196 , Zm00025a035750 , Zm00025a042258
Brachypodium KQK02999 , KQK14081 , KQK14082 , KQK14083 , KQJ85958 , KQJ85960 , KQJ85961
Barley HORVU1Hr1G025670.5 , HORVU1Hr1G025670.4 , HORVU1Hr1G025670.7 , HORVU1Hr1G025670.1 , HORVU1Hr1G025670.3 , HORVU1Hr1G025670.2 , HORVU1Hr1G025670.9 , HORVU1Hr1G025670.8 , HORVU5Hr1G014300.5 , HORVU5Hr1G014300.4 , HORVU5Hr1G014300.6 , HORVU5Hr1G014300.1 , HORVU5Hr1G014300.3 , HORVU5Hr1G014300.2 , HORVU1Hr1G025670.6 , HORVU5Hr1G093580.6 , HORVU5Hr1G093580.7 , HORVU5Hr1G093580.4 , HORVU5Hr1G093580.2 , HORVU5Hr1G093580.3 , HORVU5Hr1G093580.8
Wheat TraesCS3D02G123400 , TraesCS5B02G058500 , TraesCS3A02G121300 , TraesCS3A02G121300 , TraesCS5D02G069300 , TraesCS5D02G388300 , TraesCS5D02G388300 , TraesCS5B02G381900 , TraesCS1D02G119500 , TraesCS1B02G138100 , TraesCS5A02G058600 , TraesCS5A02G378300 , TraesCS5A02G378300 , TraesCS3B02G140700 , TraesCS1A02G118400 , TraesCS1A02G118400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G164500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
2 Sobic.001G311000 expansin precursor, putative, expressed -
3 Sobic.001G206000 acyltransferase, putative, expressed K00655: 1-acyl-sn-glycerol-3-phosphate acyltransferase
4 Sobic.008G106800 isoflavone reductase, putative, expressed -
5 Sobic.006G257900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
6 Sobic.001G471900 C2 domain containing protein, putative, expressed -
7 Sobic.007G177100 "Syntelog of ZmMYB42, bind to the COMT1, CSE, 4CL2, F5H, and SbMYB42 promroter region"(PubMedID : 30387379)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.010G228600 LSM domain containing protein, expressed -
9 Sobic.003G116700 hydrolase, alpha/beta fold family domain containing protein, expressed -
10 Sobic.003G406900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
12 Sobic.001G441600 potyvirus VPg interacting protein, putative, expressed -
13 Sobic.003G273100 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
14 Sobic.003G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.001G516500 expansin precursor, putative, expressed -
16 Sobic.002G068300 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
17 Sobic.001G247400 plant-specific domain TIGR01615 family protein, expressed -
18 Sobic.006G241300 expressed protein -
19 Sobic.001G076000 PHLOEM 2-LIKE A10, putative, expressed -
20 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2


Gene co-expression network
sample Sobic009G065000 Sobic009G065000 Sobic004G164500 Sobic004G164500 Sobic009G065000--Sobic004G164500 Sobic001G311000 Sobic001G311000 Sobic009G065000--Sobic001G311000 Sobic001G206000 Sobic001G206000 Sobic009G065000--Sobic001G206000 Sobic008G106800 Sobic008G106800 Sobic009G065000--Sobic008G106800 Sobic006G257900 Sobic006G257900 Sobic009G065000--Sobic006G257900 Sobic001G471900 Sobic001G471900 Sobic009G065000--Sobic001G471900 Sobic007G177100 Sobic007G177100 Sobic009G065000--Sobic007G177100 Sobic010G228600 Sobic010G228600 Sobic009G065000--Sobic010G228600 Sobic003G116700 Sobic003G116700 Sobic009G065000--Sobic003G116700 Sobic004G164500--Sobic001G471900 Sobic004G164500--Sobic001G311000 Sobic004G164500--Sobic009G065000 Sobic004G164500--Sobic008G106800 Sobic001G056700 Sobic001G056700 Sobic004G164500--Sobic001G056700 Sobic010G154150 Sobic010G154150 Sobic004G164500--Sobic010G154150 Sobic004G164500--Sobic006G257900 Sobic004G164500--Sobic010G228600 Sobic004G164500--Sobic007G177100 Sobic001G311000--Sobic004G164500 Sobic001G311000--Sobic009G065000 Sobic006G191600 Sobic006G191600 Sobic001G311000--Sobic006G191600 Sobic001G311000--Sobic007G177100 Sobic003G402300 Sobic003G402300 Sobic001G311000--Sobic003G402300 Sobic007G126100 Sobic007G126100 Sobic001G311000--Sobic007G126100 Sobic001G311000--Sobic008G106800 Sobic001G311000--Sobic006G257900 Sobic003G293900 Sobic003G293900 Sobic001G311000--Sobic003G293900 Sobic001G206000--Sobic003G116700 Sobic001G149700 Sobic001G149700 Sobic001G206000--Sobic001G149700 Sobic001G206000--Sobic009G065000 Sobic010G055500 Sobic010G055500 Sobic001G206000--Sobic010G055500 Sobic001G281700 Sobic001G281700 Sobic001G206000--Sobic001G281700 Sobic004G231400 Sobic004G231400 Sobic001G206000--Sobic004G231400 Sobic003G317200 Sobic003G317200 Sobic001G206000--Sobic003G317200 Sobic010G071200 Sobic010G071200 Sobic001G206000--Sobic010G071200 Sobic007G079700 Sobic007G079700 Sobic001G206000--Sobic007G079700 Sobic008G106800--Sobic004G164500 Sobic008G106800--Sobic001G471900 Sobic008G106800--Sobic001G056700 Sobic008G106800--Sobic009G065000 Sobic003G273100 Sobic003G273100 Sobic008G106800--Sobic003G273100 Sobic003G137400 Sobic003G137400 Sobic008G106800--Sobic003G137400 Sobic008G106800--Sobic001G311000 Sobic002G278300 Sobic002G278300 Sobic008G106800--Sobic002G278300 Sobic001G230700 Sobic001G230700 Sobic008G106800--Sobic001G230700 Sobic006G257900--Sobic010G071200 Sobic006G257900--Sobic001G149700 Sobic001G478300 Sobic001G478300 Sobic006G257900--Sobic001G478300 Sobic006G257900--Sobic010G154150 Sobic007G063200 Sobic007G063200 Sobic006G257900--Sobic007G063200 Sobic006G257900--Sobic004G231400 Sobic006G257900--Sobic010G055500 Sobic004G188300 Sobic004G188300 Sobic006G257900--Sobic004G188300 Sobic006G257900--Sobic004G164500 Sobic001G471900--Sobic001G056700 Sobic001G471900--Sobic004G164500 Sobic001G471900--Sobic008G106800 Sobic001G471900--Sobic010G228600 Sobic001G471900--Sobic010G154150 Sobic002G291300 Sobic002G291300 Sobic001G471900--Sobic002G291300 Sobic001G471900--Sobic006G257900 Sobic010G144400 Sobic010G144400 Sobic001G471900--Sobic010G144400 Sobic001G471900--Sobic003G273100 Sobic009G159200 Sobic009G159200 Sobic007G177100--Sobic009G159200 Sobic007G177100--Sobic007G126100 Sobic004G212900 Sobic004G212900 Sobic007G177100--Sobic004G212900 Sobic006G157500 Sobic006G157500 Sobic007G177100--Sobic006G157500 Sobic004G166400 Sobic004G166400 Sobic007G177100--Sobic004G166400 Sobic010G030401 Sobic010G030401 Sobic007G177100--Sobic010G030401 Sobic002G254200 Sobic002G254200 Sobic007G177100--Sobic002G254200 Sobic007G197600 Sobic007G197600 Sobic007G177100--Sobic007G197600 Sobic003G360000 Sobic003G360000 Sobic007G177100--Sobic003G360000 Sobic009G036900 Sobic009G036900 Sobic010G228600--Sobic009G036900 Sobic002G068300 Sobic002G068300 Sobic010G228600--Sobic002G068300 Sobic010G228600--Sobic001G056700 Sobic010G228600--Sobic001G471900 Sobic010G228600--Sobic010G144400 Sobic010G228600--Sobic010G071200 Sobic009G034400 Sobic009G034400 Sobic010G228600--Sobic009G034400 Sobic010G228600--Sobic001G149700 Sobic010G228600--Sobic004G164500 Sobic003G116700--Sobic001G206000 Sobic003G116700--Sobic001G149700 Sobic001G441600 Sobic001G441600 Sobic003G116700--Sobic001G441600 Sobic003G116700--Sobic007G079700 Sobic004G014000 Sobic004G014000 Sobic003G116700--Sobic004G014000 Sobic007G126200 Sobic007G126200 Sobic003G116700--Sobic007G126200 Sobic003G116700--Sobic009G065000 Sobic003G116700--Sobic010G055500 Sobic001G078500 Sobic001G078500 Sobic003G116700--Sobic001G078500
Octagon: transcription factors


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