Gene annotation
Transcriptome id Sobic.001G516500.1
Synonym EXLA1, Sb01g048190, ATEXPL1, ATHEXPBETA2.1, EXPL1, ATEXLA1
Functional annotation expansin precursor, putative, expressed
UniProt C5WZV2
Pfam PF03330 PF01357
Panther DB PTHR31692 PTHR31692:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G45970 : expansin-like A1
RAP-DB (Rice) LOC_Os03g04020.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a053367 , Zm00025a014615 , Zm00025a003203 , Zm00025a000460
Brachypodium KQK23802 , KQK23803
Barley HORVU7Hr1G119340.1 , HORVU4Hr1G081800.3 , HORVU4Hr1G081800.2 , HORVU4Hr1G081800.5 , HORVU4Hr1G081800.7 , HORVU4Hr1G081800.6 , HORVU4Hr1G081800.9 , HORVU4Hr1G081800.8 , HORVU4Hr1G081990.3 , HORVU4Hr1G081990.2 , HORVU4Hr1G081990.1 , HORVU7Hr1G119200.2 , HORVU4Hr1G081990.6 , HORVU4Hr1G081990.5 , HORVU7Hr1G119200.1 , HORVU4Hr1G081990.9 , HORVU4Hr1G081990.8 , HORVU7Hr1G119220.1 , HORVU4Hr1G081990.7 , HORVU4Hr1G081990.4 , HORVU4Hr1G081800.15 , HORVU4Hr1G081800.16 , HORVU4Hr1G081800.11 , HORVU4Hr1G081800.10 , HORVU4Hr1G081800.13 , HORVU4Hr1G081800.12 , HORVU4Hr1G081800.18 , HORVU4Hr1G081800.1 , HORVU4Hr1G081990.13 , HORVU4Hr1G081990.12 , HORVU4Hr1G081990.11 , HORVU4Hr1G081990.10 , HORVU4Hr1G081990.14 , HORVU4Hr1G081800.4
Wheat TraesCS5A02G499100 , TraesCS5A02G499300 , TraesCS4B02G327200 , TraesCS4D02G323600 , TraesCS4D02G324000 , TraesCS4D02G323800 , TraesCS4D02G323800 , TraesCS4B02G326900 , TraesCS4B02G327100 , TraesCS5A02G498900 , TraesCS7B02G469100
Populus -


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cDNA sequences
Sobic.001G516500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
2 Sobic.008G106800 isoflavone reductase, putative, expressed -
3 Sobic.001G471900 C2 domain containing protein, putative, expressed -
4 Sobic.001G230700 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
5 Sobic.009G065000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
6 Sobic.004G164500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
7 Sobic.006G241300 expressed protein -
8 Sobic.006G194150 - -
9 Sobic.001G028800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
10 Sobic.002G278300 thaumatin, putative, expressed -
11 Sobic.003G293900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@plant-specific domain TIGR01615 family protein, expressed -
12 Sobic.010G228600 LSM domain containing protein, expressed -
13 Sobic.001G230900 - K07910: Ras-related protein Rab-18
14 Sobic.001G253600 expressed protein -
15 Sobic.004G157300 "glycerophosphodiester phosphodiesterase, up-regulated under drought stress, involved in the final step of the choline biosynthesis pathway, mapped into a QTL involved in pre-flowering drought tolerance (QSTG2_4)"(PubMedID : 24655390)@glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
16 Sobic.001G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
17 Sobic.001G247400 plant-specific domain TIGR01615 family protein, expressed -
18 Sobic.008G126200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin binding protein, putative, expressed -
19 Sobic.001G056700 "O2(rtholog in meize:Hartings et al., 1989)"(PubMedID : 31659831)@bZIP transcription factor domain containing protein, expressed -
20 Sobic.010G144400 glycosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic001G516500 Sobic001G516500 Sobic003G034500 Sobic003G034500 Sobic001G516500--Sobic003G034500 Sobic008G106800 Sobic008G106800 Sobic001G516500--Sobic008G106800 Sobic001G471900 Sobic001G471900 Sobic001G516500--Sobic001G471900 Sobic001G230700 Sobic001G230700 Sobic001G516500--Sobic001G230700 Sobic009G065000 Sobic009G065000 Sobic001G516500--Sobic009G065000 Sobic004G164500 Sobic004G164500 Sobic001G516500--Sobic004G164500 Sobic006G241300 Sobic006G241300 Sobic001G516500--Sobic006G241300 Sobic006G194150 Sobic006G194150 Sobic001G516500--Sobic006G194150 Sobic001G028800 Sobic001G028800 Sobic001G516500--Sobic001G028800 Sobic009G183500 Sobic009G183500 Sobic003G034500--Sobic009G183500 Sobic003G034500--Sobic001G516500 Sobic001G032100 Sobic001G032100 Sobic003G034500--Sobic001G032100 Sobic008G126200 Sobic008G126200 Sobic003G034500--Sobic008G126200 Sobic001G247400 Sobic001G247400 Sobic003G034500--Sobic001G247400 Sobic003G296600 Sobic003G296600 Sobic003G034500--Sobic003G296600 Sobic003G034500--Sobic006G194150 Sobic001G363100 Sobic001G363100 Sobic003G034500--Sobic001G363100 Sobic003G034500--Sobic001G028800 Sobic008G106800--Sobic004G164500 Sobic008G106800--Sobic001G471900 Sobic001G056700 Sobic001G056700 Sobic008G106800--Sobic001G056700 Sobic008G106800--Sobic009G065000 Sobic003G273100 Sobic003G273100 Sobic008G106800--Sobic003G273100 Sobic003G137400 Sobic003G137400 Sobic008G106800--Sobic003G137400 Sobic001G311000 Sobic001G311000 Sobic008G106800--Sobic001G311000 Sobic002G278300 Sobic002G278300 Sobic008G106800--Sobic002G278300 Sobic008G106800--Sobic001G230700 Sobic001G471900--Sobic001G056700 Sobic001G471900--Sobic004G164500 Sobic001G471900--Sobic008G106800 Sobic010G228600 Sobic010G228600 Sobic001G471900--Sobic010G228600 Sobic010G154150 Sobic010G154150 Sobic001G471900--Sobic010G154150 Sobic002G291300 Sobic002G291300 Sobic001G471900--Sobic002G291300 Sobic006G257900 Sobic006G257900 Sobic001G471900--Sobic006G257900 Sobic010G144400 Sobic010G144400 Sobic001G471900--Sobic010G144400 Sobic001G471900--Sobic003G273100 Sobic001G230700--Sobic002G291300 Sobic001G230700--Sobic003G296600 Sobic006G184300 Sobic006G184300 Sobic001G230700--Sobic006G184300 Sobic001G230700--Sobic008G106800 Sobic001G230700--Sobic004G164500 Sobic003G293900 Sobic003G293900 Sobic001G230700--Sobic003G293900 Sobic001G230700--Sobic001G516500 Sobic001G230700--Sobic001G311000 Sobic007G150200 Sobic007G150200 Sobic001G230700--Sobic007G150200 Sobic009G065000--Sobic004G164500 Sobic009G065000--Sobic001G311000 Sobic001G206000 Sobic001G206000 Sobic009G065000--Sobic001G206000 Sobic009G065000--Sobic008G106800 Sobic009G065000--Sobic006G257900 Sobic009G065000--Sobic001G471900 Sobic007G177100 Sobic007G177100 Sobic009G065000--Sobic007G177100 Sobic009G065000--Sobic010G228600 Sobic003G116700 Sobic003G116700 Sobic009G065000--Sobic003G116700 Sobic004G164500--Sobic001G471900 Sobic004G164500--Sobic001G311000 Sobic004G164500--Sobic009G065000 Sobic004G164500--Sobic008G106800 Sobic004G164500--Sobic001G056700 Sobic004G164500--Sobic010G154150 Sobic004G164500--Sobic006G257900 Sobic004G164500--Sobic010G228600 Sobic004G164500--Sobic007G177100 Sobic003G406900 Sobic003G406900 Sobic006G241300--Sobic003G406900 Sobic003G408200 Sobic003G408200 Sobic006G241300--Sobic003G408200 Sobic006G241300--Sobic004G164500 Sobic005G026800 Sobic005G026800 Sobic006G241300--Sobic005G026800 Sobic006G241300--Sobic003G296600 Sobic002G254200 Sobic002G254200 Sobic006G241300--Sobic002G254200 Sobic006G241300--Sobic002G278300 Sobic006G241300--Sobic003G293900 Sobic006G191600 Sobic006G191600 Sobic006G241300--Sobic006G191600 Sobic006G194150--Sobic001G032100 Sobic005G012000 Sobic005G012000 Sobic006G194150--Sobic005G012000 Sobic005G085600 Sobic005G085600 Sobic006G194150--Sobic005G085600 Sobic006G194300 Sobic006G194300 Sobic006G194150--Sobic006G194300 Sobic006G194150--Sobic003G296600 Sobic006G194150--Sobic006G184300 Sobic006G194150--Sobic003G293900 Sobic006G194150--Sobic008G126200 Sobic003G397300 Sobic003G397300 Sobic006G194150--Sobic003G397300 Sobic001G028800--Sobic003G034500 Sobic001G028800--Sobic006G194150 Sobic001G028800--Sobic003G293900 Sobic001G028800--Sobic001G516500 Sobic001G028800--Sobic006G194300 Sobic001G028800--Sobic008G126200 Sobic001G028800--Sobic006G184300 Sobic001G028800--Sobic001G363100 Sobic001G028800--Sobic001G230700
Octagon: transcription factors


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