Gene annotation
Transcriptome id Sobic.001G341300.2,Sobic.001G341300.1
Synonym Sb01g032790
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ATP-dependent protease, putative, expressed
UniProt C5WWN8
Pfam PF02190
Panther DB PTHR23327 PTHR23327:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004176ATP-dependent peptidase activity


Orthologs (automatic annotation)
TAIR AT1G19740 : ATP-dependent protease La (LON) domain protein
RAP-DB (Rice) LOC_Os03g29540.1 : ATP-dependent protease, putative, expressed
MaizeGDB (Corn) Zm00025a002815
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G341300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G376400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.006G159400 - -
3 Sobic.004G216700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 21930910)@-(PubMedID : 24884377)@response regulator receiver domain containing protein, expressed K12127: TOC1, pseudo-response regulator 1
4 Sobic.009G159700 expressed protein -
5 Sobic.008G185900 RNA recognition motif containing protein, expressed -
6 Sobic.009G166801 - -
7 Sobic.001G253600 expressed protein -
8 Sobic.001G516500 expansin precursor, putative, expressed -
9 Sobic.005G172300 OsFBDUF60 - F-box and DUF domain containing protein, expressed -
10 Sobic.003G107400 3-beta-hydroxysteroid-Delta-isomerase, putative, expressed K01824: cholestenol Delta-isomerase
11 Sobic.005G085600 OsFBK25 - F-box domain and kelch repeat containing protein, expressed -
12 Sobic.005G085100 - -
13 Sobic.006G047000 CBS domain containing membrane protein, putative, expressed -
14 Sobic.002G279100 "Syntelog of ZmMYB31, bind to the COMT1, CSE, and 4CL2 promroter region."(PubMedID : 30387379)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.008G136000 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
16 Sobic.001G141300 RNA recognition motif containing protein, expressed -
17 Sobic.003G293900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@plant-specific domain TIGR01615 family protein, expressed -
18 Sobic.004G285800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed K14209: SLC36A, solute carrier family 36 (proton-coupled amino acid transporter)
19 Sobic.009G013900 ankyrin repeat domain-containing protein 28, putative, expressed -
20 Sobic.002G278300 thaumatin, putative, expressed -


Gene co-expression network
sample Sobic001G341300 Sobic001G341300 Sobic002G376400 Sobic002G376400 Sobic001G341300--Sobic002G376400 Sobic006G159400 Sobic006G159400 Sobic001G341300--Sobic006G159400 Sobic004G216700 Sobic004G216700 Sobic001G341300--Sobic004G216700 Sobic009G159700 Sobic009G159700 Sobic001G341300--Sobic009G159700 Sobic008G185900 Sobic008G185900 Sobic001G341300--Sobic008G185900 Sobic009G166801 Sobic009G166801 Sobic001G341300--Sobic009G166801 Sobic001G253600 Sobic001G253600 Sobic001G341300--Sobic001G253600 Sobic001G516500 Sobic001G516500 Sobic001G341300--Sobic001G516500 Sobic005G172300 Sobic005G172300 Sobic001G341300--Sobic005G172300 Sobic002G376400--Sobic001G341300 Sobic002G376400--Sobic004G216700 Sobic003G401400 Sobic003G401400 Sobic002G376400--Sobic003G401400 Sobic002G376400--Sobic008G185900 Sobic009G129500 Sobic009G129500 Sobic002G376400--Sobic009G129500 Sobic002G376400--Sobic009G159700 Sobic002G376400--Sobic009G166801 Sobic002G376400--Sobic005G172300 Sobic010G072300 Sobic010G072300 Sobic002G376400--Sobic010G072300 Sobic006G159400--Sobic001G341300 Sobic002G278300 Sobic002G278300 Sobic006G159400--Sobic002G278300 Sobic007G177100 Sobic007G177100 Sobic006G159400--Sobic007G177100 Sobic008G106800 Sobic008G106800 Sobic006G159400--Sobic008G106800 Sobic004G152400 Sobic004G152400 Sobic006G159400--Sobic004G152400 Sobic010G259900 Sobic010G259900 Sobic006G159400--Sobic010G259900 Sobic007G126100 Sobic007G126100 Sobic006G159400--Sobic007G126100 Sobic004G164500 Sobic004G164500 Sobic006G159400--Sobic004G164500 Sobic006G047000 Sobic006G047000 Sobic006G159400--Sobic006G047000 Sobic004G216700--Sobic002G376400 Sobic005G085100 Sobic005G085100 Sobic004G216700--Sobic005G085100 Sobic004G216700--Sobic001G341300 Sobic001G480400 Sobic001G480400 Sobic004G216700--Sobic001G480400 Sobic010G143400 Sobic010G143400 Sobic004G216700--Sobic010G143400 Sobic004G216700--Sobic009G159700 Sobic006G241200 Sobic006G241200 Sobic004G216700--Sobic006G241200 Sobic008G013900 Sobic008G013900 Sobic004G216700--Sobic008G013900 Sobic007G189800 Sobic007G189800 Sobic004G216700--Sobic007G189800 Sobic005G085200 Sobic005G085200 Sobic009G159700--Sobic005G085200 Sobic005G085600 Sobic005G085600 Sobic009G159700--Sobic005G085600 Sobic004G285800 Sobic004G285800 Sobic009G159700--Sobic004G285800 Sobic009G159700--Sobic009G166801 Sobic010G057300 Sobic010G057300 Sobic009G159700--Sobic010G057300 Sobic009G159700--Sobic007G189800 Sobic009G159700--Sobic006G241200 Sobic004G345900 Sobic004G345900 Sobic009G159700--Sobic004G345900 Sobic010G057400 Sobic010G057400 Sobic009G159700--Sobic010G057400 Sobic001G141300 Sobic001G141300 Sobic008G185900--Sobic001G141300 Sobic008G185900--Sobic003G401400 Sobic008G185900--Sobic001G341300 Sobic008G185900--Sobic002G376400 Sobic008G133500 Sobic008G133500 Sobic008G185900--Sobic008G133500 Sobic002G279100 Sobic002G279100 Sobic008G185900--Sobic002G279100 Sobic008G185900--Sobic004G216700 Sobic008G171800 Sobic008G171800 Sobic008G185900--Sobic008G171800 Sobic008G185900--Sobic006G241200 Sobic009G166801--Sobic009G159700 Sobic009G030100 Sobic009G030100 Sobic009G166801--Sobic009G030100 Sobic009G166801--Sobic004G285800 Sobic010G110700 Sobic010G110700 Sobic009G166801--Sobic010G110700 Sobic009G166801--Sobic001G341300 Sobic003G293900 Sobic003G293900 Sobic009G166801--Sobic003G293900 Sobic002G338300 Sobic002G338300 Sobic009G166801--Sobic002G338300 Sobic009G166801--Sobic005G085600 Sobic006G269200 Sobic006G269200 Sobic009G166801--Sobic006G269200 Sobic010G228600 Sobic010G228600 Sobic001G253600--Sobic010G228600 Sobic010G144400 Sobic010G144400 Sobic001G253600--Sobic010G144400 Sobic001G056700 Sobic001G056700 Sobic001G253600--Sobic001G056700 Sobic002G258100 Sobic002G258100 Sobic001G253600--Sobic002G258100 Sobic001G471900 Sobic001G471900 Sobic001G253600--Sobic001G471900 Sobic001G149700 Sobic001G149700 Sobic001G253600--Sobic001G149700 Sobic001G253600--Sobic008G106800 Sobic007G126200 Sobic007G126200 Sobic001G253600--Sobic007G126200 Sobic003G116700 Sobic003G116700 Sobic001G253600--Sobic003G116700 Sobic003G034500 Sobic003G034500 Sobic001G516500--Sobic003G034500 Sobic001G516500--Sobic008G106800 Sobic001G516500--Sobic001G471900 Sobic001G230700 Sobic001G230700 Sobic001G516500--Sobic001G230700 Sobic009G065000 Sobic009G065000 Sobic001G516500--Sobic009G065000 Sobic001G516500--Sobic004G164500 Sobic006G241300 Sobic006G241300 Sobic001G516500--Sobic006G241300 Sobic006G194150 Sobic006G194150 Sobic001G516500--Sobic006G194150 Sobic001G028800 Sobic001G028800 Sobic001G516500--Sobic001G028800 Sobic005G172300--Sobic001G341300 Sobic002G380000 Sobic002G380000 Sobic005G172300--Sobic002G380000 Sobic005G172300--Sobic002G376400 Sobic003G107400 Sobic003G107400 Sobic005G172300--Sobic003G107400 Sobic004G196400 Sobic004G196400 Sobic005G172300--Sobic004G196400 Sobic005G172300--Sobic004G152400 Sobic005G178700 Sobic005G178700 Sobic005G172300--Sobic005G178700 Sobic006G242300 Sobic006G242300 Sobic005G172300--Sobic006G242300 Sobic001G467300 Sobic001G467300 Sobic005G172300--Sobic001G467300
Octagon: transcription factors


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