Gene annotation
Transcriptome id Sobic.005G172300.1
Synonym Sb05g023210
Functional annotation OsFBDUF60 - F-box and DUF domain containing protein, expressed
UniProt C5Y5G6
Pfam PF00646
Panther DB PTHR33110 PTHR33110:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os11g38200.1 : OsFBDUF60 - F-box and DUF domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
2 Sobic.002G380000 TRM112, putative, expressed K15448: TRM112, multifunctional methyltransferase subunit TRM112
3 Sobic.002G376400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.003G107400 3-beta-hydroxysteroid-Delta-isomerase, putative, expressed K01824: cholestenol Delta-isomerase
5 Sobic.004G196400 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
6 Sobic.004G152400 ribosomal protein L29, putative, expressed K02918: RP-L35e, large subunit ribosomal protein L35e
7 Sobic.005G178700 OsFBX135 - F-box domain containing protein, expressed -
8 Sobic.006G242300 - -
9 Sobic.001G467300 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
10 Sobic.009G117000 expressed protein -
11 Sobic.006G056600 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
12 Sobic.003G401400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
13 Sobic.003G128000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.001G110800 csAtPR5, putative, expressed -
15 Sobic.003G183900 pentatricopeptide, putative, expressed -
16 Sobic.002G007100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
17 Sobic.006G220700 signal recognition particle 14 kDa protein, putative, expressed K03104: signal recognition particle subunit SRP14
18 Sobic.006G159400 - -
19 Sobic.008G185900 RNA recognition motif containing protein, expressed -
20 Sobic.004G216700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 21930910)@-(PubMedID : 24884377)@response regulator receiver domain containing protein, expressed K12127: TOC1, pseudo-response regulator 1


Gene co-expression network
sample Sobic005G172300 Sobic005G172300 Sobic001G341300 Sobic001G341300 Sobic005G172300--Sobic001G341300 Sobic002G380000 Sobic002G380000 Sobic005G172300--Sobic002G380000 Sobic002G376400 Sobic002G376400 Sobic005G172300--Sobic002G376400 Sobic003G107400 Sobic003G107400 Sobic005G172300--Sobic003G107400 Sobic004G196400 Sobic004G196400 Sobic005G172300--Sobic004G196400 Sobic004G152400 Sobic004G152400 Sobic005G172300--Sobic004G152400 Sobic005G178700 Sobic005G178700 Sobic005G172300--Sobic005G178700 Sobic006G242300 Sobic006G242300 Sobic005G172300--Sobic006G242300 Sobic001G467300 Sobic001G467300 Sobic005G172300--Sobic001G467300 Sobic001G341300--Sobic002G376400 Sobic006G159400 Sobic006G159400 Sobic001G341300--Sobic006G159400 Sobic004G216700 Sobic004G216700 Sobic001G341300--Sobic004G216700 Sobic009G159700 Sobic009G159700 Sobic001G341300--Sobic009G159700 Sobic008G185900 Sobic008G185900 Sobic001G341300--Sobic008G185900 Sobic009G166801 Sobic009G166801 Sobic001G341300--Sobic009G166801 Sobic001G253600 Sobic001G253600 Sobic001G341300--Sobic001G253600 Sobic001G516500 Sobic001G516500 Sobic001G341300--Sobic001G516500 Sobic001G341300--Sobic005G172300 Sobic005G157200 Sobic005G157200 Sobic002G380000--Sobic005G157200 Sobic008G058300 Sobic008G058300 Sobic002G380000--Sobic008G058300 Sobic010G029400 Sobic010G029400 Sobic002G380000--Sobic010G029400 Sobic002G022400 Sobic002G022400 Sobic002G380000--Sobic002G022400 Sobic002G007100 Sobic002G007100 Sobic002G380000--Sobic002G007100 Sobic002G380000--Sobic004G152400 Sobic004G002350 Sobic004G002350 Sobic002G380000--Sobic004G002350 Sobic006G052400 Sobic006G052400 Sobic002G380000--Sobic006G052400 Sobic003G025200 Sobic003G025200 Sobic002G380000--Sobic003G025200 Sobic002G376400--Sobic001G341300 Sobic002G376400--Sobic004G216700 Sobic003G401400 Sobic003G401400 Sobic002G376400--Sobic003G401400 Sobic002G376400--Sobic008G185900 Sobic009G129500 Sobic009G129500 Sobic002G376400--Sobic009G129500 Sobic002G376400--Sobic009G159700 Sobic002G376400--Sobic009G166801 Sobic002G376400--Sobic005G172300 Sobic010G072300 Sobic010G072300 Sobic002G376400--Sobic010G072300 Sobic004G072800 Sobic004G072800 Sobic003G107400--Sobic004G072800 Sobic003G107400--Sobic001G253600 Sobic003G107400--Sobic004G152400 Sobic009G032300 Sobic009G032300 Sobic003G107400--Sobic009G032300 Sobic004G349000 Sobic004G349000 Sobic003G107400--Sobic004G349000 Sobic003G107400--Sobic001G341300 Sobic010G144400 Sobic010G144400 Sobic003G107400--Sobic010G144400 Sobic001G429400 Sobic001G429400 Sobic003G107400--Sobic001G429400 Sobic002G278300 Sobic002G278300 Sobic003G107400--Sobic002G278300 Sobic006G147000 Sobic006G147000 Sobic004G196400--Sobic006G147000 Sobic001G533500 Sobic001G533500 Sobic004G196400--Sobic001G533500 Sobic006G211200 Sobic006G211200 Sobic004G196400--Sobic006G211200 Sobic007G019000 Sobic007G019000 Sobic004G196400--Sobic007G019000 Sobic007G178600 Sobic007G178600 Sobic004G196400--Sobic007G178600 Sobic001G537200 Sobic001G537200 Sobic004G196400--Sobic001G537200 Sobic004G252100 Sobic004G252100 Sobic004G196400--Sobic004G252100 Sobic007G190800 Sobic007G190800 Sobic004G196400--Sobic007G190800 Sobic002G286900 Sobic002G286900 Sobic004G196400--Sobic002G286900 Sobic002G258800 Sobic002G258800 Sobic004G152400--Sobic002G258800 Sobic004G152700 Sobic004G152700 Sobic004G152400--Sobic004G152700 Sobic002G259000 Sobic002G259000 Sobic004G152400--Sobic002G259000 Sobic010G182300 Sobic010G182300 Sobic004G152400--Sobic010G182300 Sobic004G103800 Sobic004G103800 Sobic004G152400--Sobic004G103800 Sobic003G107600 Sobic003G107600 Sobic004G152400--Sobic003G107600 Sobic001G505100 Sobic001G505100 Sobic004G152400--Sobic001G505100 Sobic004G152400--Sobic010G029400 Sobic010G259900 Sobic010G259900 Sobic004G152400--Sobic010G259900 Sobic004G227100 Sobic004G227100 Sobic005G178700--Sobic004G227100 Sobic003G223500 Sobic003G223500 Sobic005G178700--Sobic003G223500 Sobic007G143500 Sobic007G143500 Sobic005G178700--Sobic007G143500 Sobic004G235500 Sobic004G235500 Sobic005G178700--Sobic004G235500 Sobic001G401400 Sobic001G401400 Sobic005G178700--Sobic001G401400 Sobic006G067900 Sobic006G067900 Sobic005G178700--Sobic006G067900 Sobic007G030600 Sobic007G030600 Sobic005G178700--Sobic007G030600 Sobic001G370300 Sobic001G370300 Sobic005G178700--Sobic001G370300 Sobic004G226900 Sobic004G226900 Sobic005G178700--Sobic004G226900 Sobic001G041200 Sobic001G041200 Sobic006G242300--Sobic001G041200 Sobic003G045400 Sobic003G045400 Sobic006G242300--Sobic003G045400 Sobic006G056600 Sobic006G056600 Sobic006G242300--Sobic006G056600 Sobic009G133400 Sobic009G133400 Sobic006G242300--Sobic009G133400 Sobic003G119400 Sobic003G119400 Sobic006G242300--Sobic003G119400 Sobic001G067900 Sobic001G067900 Sobic006G242300--Sobic001G067900 Sobic009G033900 Sobic009G033900 Sobic006G242300--Sobic009G033900 Sobic006G242300--Sobic004G072800 Sobic003G043100 Sobic003G043100 Sobic006G242300--Sobic003G043100 Sobic009G065400 Sobic009G065400 Sobic001G467300--Sobic009G065400 Sobic001G402300 Sobic001G402300 Sobic001G467300--Sobic001G402300 Sobic002G413400 Sobic002G413400 Sobic001G467300--Sobic002G413400 Sobic001G073000 Sobic001G073000 Sobic001G467300--Sobic001G073000 Sobic001G216200 Sobic001G216200 Sobic001G467300--Sobic001G216200 Sobic001G491100 Sobic001G491100 Sobic001G467300--Sobic001G491100 Sobic003G248600 Sobic003G248600 Sobic001G467300--Sobic003G248600 Sobic010G173100 Sobic010G173100 Sobic001G467300--Sobic010G173100 Sobic008G004000 Sobic008G004000 Sobic001G467300--Sobic008G004000
Octagon: transcription factors


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