Gene annotation
Transcriptome id Sobic.003G128000.2,Sobic.003G128000.3
Synonym Sb03g010835
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1W0VX62
Pfam PF01535 PF14432
Panther DB PTHR24015 PTHR24015:SF363
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G15690 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os04g09530.2,LOC_Os04g09530.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a044769 , Zm00025a036770
Brachypodium KQK04597
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G392100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
2 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.001G009400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
5 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
6 Sobic.001G149100 vegetative storage protein, putative, expressed -
7 Sobic.003G239000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
8 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
9 Sobic.001G254400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized oxidoreductase, putative, expressed -
10 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -
11 Sobic.002G267600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.001G391101 - -
13 Sobic.010G224900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
14 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
15 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
16 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
17 Sobic.003G103000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed -
18 Sobic.001G187800 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
19 Sobic.006G279900 RING finger protein 13, putative, expressed K15692: RNF13, E3 ubiquitin-protein ligase RNF13
20 Sobic.003G299200 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic003G128000 Sobic003G128000 Sobic001G392100 Sobic001G392100 Sobic003G128000--Sobic001G392100 Sobic009G155400 Sobic009G155400 Sobic003G128000--Sobic009G155400 Sobic001G009400 Sobic001G009400 Sobic003G128000--Sobic001G009400 Sobic008G163400 Sobic008G163400 Sobic003G128000--Sobic008G163400 Sobic004G217900 Sobic004G217900 Sobic003G128000--Sobic004G217900 Sobic001G149100 Sobic001G149100 Sobic003G128000--Sobic001G149100 Sobic003G239000 Sobic003G239000 Sobic003G128000--Sobic003G239000 Sobic001G347100 Sobic001G347100 Sobic003G128000--Sobic001G347100 Sobic001G254400 Sobic001G254400 Sobic003G128000--Sobic001G254400 Sobic001G392100--Sobic003G128000 Sobic001G392100--Sobic003G239000 Sobic003G322200 Sobic003G322200 Sobic001G392100--Sobic003G322200 Sobic008G083400 Sobic008G083400 Sobic001G392100--Sobic008G083400 Sobic002G267600 Sobic002G267600 Sobic001G392100--Sobic002G267600 Sobic001G391101 Sobic001G391101 Sobic001G392100--Sobic001G391101 Sobic001G392100--Sobic001G149100 Sobic009G253400 Sobic009G253400 Sobic001G392100--Sobic009G253400 Sobic008G066900 Sobic008G066900 Sobic001G392100--Sobic008G066900 Sobic009G116400 Sobic009G116400 Sobic009G155400--Sobic009G116400 Sobic009G155400--Sobic008G163400 Sobic004G241000 Sobic004G241000 Sobic009G155400--Sobic004G241000 Sobic006G085900 Sobic006G085900 Sobic009G155400--Sobic006G085900 Sobic009G155400--Sobic004G217900 Sobic006G069100 Sobic006G069100 Sobic009G155400--Sobic006G069100 Sobic002G172500 Sobic002G172500 Sobic009G155400--Sobic002G172500 Sobic006G262700 Sobic006G262700 Sobic009G155400--Sobic006G262700 Sobic005G210700 Sobic005G210700 Sobic009G155400--Sobic005G210700 Sobic001G187800 Sobic001G187800 Sobic001G009400--Sobic001G187800 Sobic001G009400--Sobic009G155400 Sobic001G009400--Sobic003G128000 Sobic009G096100 Sobic009G096100 Sobic001G009400--Sobic009G096100 Sobic007G090701 Sobic007G090701 Sobic001G009400--Sobic007G090701 Sobic001G009400--Sobic004G217900 Sobic003G419800 Sobic003G419800 Sobic001G009400--Sobic003G419800 Sobic001G009400--Sobic009G116400 Sobic001G009400--Sobic001G391101 Sobic008G163400--Sobic003G239000 Sobic008G163400--Sobic004G241000 Sobic008G163400--Sobic009G155400 Sobic008G163400--Sobic009G116400 Sobic004G256900 Sobic004G256900 Sobic008G163400--Sobic004G256900 Sobic006G262800 Sobic006G262800 Sobic008G163400--Sobic006G262800 Sobic001G122200 Sobic001G122200 Sobic008G163400--Sobic001G122200 Sobic008G163400--Sobic002G267600 Sobic008G163400--Sobic001G149100 Sobic004G217900--Sobic009G155400 Sobic004G217900--Sobic008G163400 Sobic004G217900--Sobic009G116400 Sobic004G217900--Sobic001G187800 Sobic008G099900 Sobic008G099900 Sobic004G217900--Sobic008G099900 Sobic003G051500 Sobic003G051500 Sobic004G217900--Sobic003G051500 Sobic004G217900--Sobic004G241000 Sobic010G190900 Sobic010G190900 Sobic004G217900--Sobic010G190900 Sobic004G217900--Sobic001G149100 Sobic001G149100--Sobic001G347100 Sobic003G299200 Sobic003G299200 Sobic001G149100--Sobic003G299200 Sobic010G252700 Sobic010G252700 Sobic001G149100--Sobic010G252700 Sobic008G179000 Sobic008G179000 Sobic001G149100--Sobic008G179000 Sobic001G149100--Sobic004G241000 Sobic001G149100--Sobic008G163400 Sobic001G149100--Sobic003G239000 Sobic001G149100--Sobic006G069100 Sobic001G149100--Sobic002G267600 Sobic003G239000--Sobic008G163400 Sobic003G239000--Sobic004G241000 Sobic003G239000--Sobic002G267600 Sobic003G239000--Sobic001G149100 Sobic003G239000--Sobic009G155400 Sobic003G239000--Sobic008G179000 Sobic003G239000--Sobic006G069100 Sobic003G239000--Sobic004G256900 Sobic003G239000--Sobic008G066900 Sobic001G347100--Sobic001G149100 Sobic001G347100--Sobic001G391101 Sobic001G081300 Sobic001G081300 Sobic001G347100--Sobic001G081300 Sobic009G238700 Sobic009G238700 Sobic001G347100--Sobic009G238700 Sobic007G179600 Sobic007G179600 Sobic001G347100--Sobic007G179600 Sobic001G347100--Sobic003G299200 Sobic001G347100--Sobic004G241000 Sobic001G347100--Sobic006G069100 Sobic001G347100--Sobic009G155400 Sobic007G060900 Sobic007G060900 Sobic001G254400--Sobic007G060900 Sobic002G172600 Sobic002G172600 Sobic001G254400--Sobic002G172600 Sobic001G254400--Sobic003G128000 Sobic008G185900 Sobic008G185900 Sobic001G254400--Sobic008G185900 Sobic004G247800 Sobic004G247800 Sobic001G254400--Sobic004G247800 Sobic002G407800 Sobic002G407800 Sobic001G254400--Sobic002G407800 Sobic003G176200 Sobic003G176200 Sobic001G254400--Sobic003G176200 Sobic004G216700 Sobic004G216700 Sobic001G254400--Sobic004G216700 Sobic001G141300 Sobic001G141300 Sobic001G254400--Sobic001G141300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.