Gene annotation
Transcriptome id Sobic.001G009400.1
Synonym Sb01g000920
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1B6QGQ3
Pfam PF13812 PF01535
Panther DB PTHR24015 PTHR24015:SF858
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G03510 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g63510.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a009075
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G187800 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
2 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.003G128000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -
5 Sobic.007G090701 - -
6 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
7 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
8 Sobic.009G116400 pentatricopeptide, putative, expressed -
9 Sobic.001G391101 - -
10 Sobic.007G077700 expressed protein -
11 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
12 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
13 Sobic.007G000400 B3 DNA binding domain containing protein, expressed -
14 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
15 Sobic.003G420000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
16 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.007G179600 pentatricopeptide, putative, expressed -
18 Sobic.006G179000 growth regulator related protein, putative, expressed -
19 Sobic.001G087100 far-red light perception and signal transduction(PubMedID : 14963106)@phytochrome C, putative, expressed -
20 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -


Gene co-expression network
sample Sobic001G009400 Sobic001G009400 Sobic001G187800 Sobic001G187800 Sobic001G009400--Sobic001G187800 Sobic009G155400 Sobic009G155400 Sobic001G009400--Sobic009G155400 Sobic003G128000 Sobic003G128000 Sobic001G009400--Sobic003G128000 Sobic009G096100 Sobic009G096100 Sobic001G009400--Sobic009G096100 Sobic007G090701 Sobic007G090701 Sobic001G009400--Sobic007G090701 Sobic004G217900 Sobic004G217900 Sobic001G009400--Sobic004G217900 Sobic003G419800 Sobic003G419800 Sobic001G009400--Sobic003G419800 Sobic009G116400 Sobic009G116400 Sobic001G009400--Sobic009G116400 Sobic001G391101 Sobic001G391101 Sobic001G009400--Sobic001G391101 Sobic001G187800--Sobic001G009400 Sobic001G187800--Sobic009G155400 Sobic001G448100 Sobic001G448100 Sobic001G187800--Sobic001G448100 Sobic006G111200 Sobic006G111200 Sobic001G187800--Sobic006G111200 Sobic001G187800--Sobic004G217900 Sobic006G262700 Sobic006G262700 Sobic001G187800--Sobic006G262700 Sobic009G108400 Sobic009G108400 Sobic001G187800--Sobic009G108400 Sobic001G347100 Sobic001G347100 Sobic001G187800--Sobic001G347100 Sobic005G011000 Sobic005G011000 Sobic001G187800--Sobic005G011000 Sobic009G155400--Sobic009G116400 Sobic008G163400 Sobic008G163400 Sobic009G155400--Sobic008G163400 Sobic004G241000 Sobic004G241000 Sobic009G155400--Sobic004G241000 Sobic006G085900 Sobic006G085900 Sobic009G155400--Sobic006G085900 Sobic009G155400--Sobic004G217900 Sobic006G069100 Sobic006G069100 Sobic009G155400--Sobic006G069100 Sobic002G172500 Sobic002G172500 Sobic009G155400--Sobic002G172500 Sobic009G155400--Sobic006G262700 Sobic005G210700 Sobic005G210700 Sobic009G155400--Sobic005G210700 Sobic001G392100 Sobic001G392100 Sobic003G128000--Sobic001G392100 Sobic003G128000--Sobic009G155400 Sobic003G128000--Sobic001G009400 Sobic003G128000--Sobic008G163400 Sobic003G128000--Sobic004G217900 Sobic001G149100 Sobic001G149100 Sobic003G128000--Sobic001G149100 Sobic003G239000 Sobic003G239000 Sobic003G128000--Sobic003G239000 Sobic003G128000--Sobic001G347100 Sobic001G254400 Sobic001G254400 Sobic003G128000--Sobic001G254400 Sobic008G056900 Sobic008G056900 Sobic009G096100--Sobic008G056900 Sobic002G192500 Sobic002G192500 Sobic009G096100--Sobic002G192500 Sobic010G157700 Sobic010G157700 Sobic009G096100--Sobic010G157700 Sobic001G485600 Sobic001G485600 Sobic009G096100--Sobic001G485600 Sobic006G056000 Sobic006G056000 Sobic009G096100--Sobic006G056000 Sobic007G043900 Sobic007G043900 Sobic009G096100--Sobic007G043900 Sobic002G344500 Sobic002G344500 Sobic009G096100--Sobic002G344500 Sobic002G380100 Sobic002G380100 Sobic009G096100--Sobic002G380100 Sobic007G077700 Sobic007G077700 Sobic009G096100--Sobic007G077700 Sobic001G261537 Sobic001G261537 Sobic007G090701--Sobic001G261537 Sobic010G046400 Sobic010G046400 Sobic007G090701--Sobic010G046400 Sobic007G090701--Sobic001G009400 Sobic007G090701--Sobic001G187800 Sobic003G156766 Sobic003G156766 Sobic007G090701--Sobic003G156766 Sobic007G090701--Sobic009G155400 Sobic006G100000 Sobic006G100000 Sobic007G090701--Sobic006G100000 Sobic005G154700 Sobic005G154700 Sobic007G090701--Sobic005G154700 Sobic007G090701--Sobic002G344500 Sobic004G217900--Sobic009G155400 Sobic004G217900--Sobic008G163400 Sobic004G217900--Sobic009G116400 Sobic004G217900--Sobic001G187800 Sobic008G099900 Sobic008G099900 Sobic004G217900--Sobic008G099900 Sobic003G051500 Sobic003G051500 Sobic004G217900--Sobic003G051500 Sobic004G217900--Sobic004G241000 Sobic010G190900 Sobic010G190900 Sobic004G217900--Sobic010G190900 Sobic004G217900--Sobic001G149100 Sobic005G028300 Sobic005G028300 Sobic003G419800--Sobic005G028300 Sobic001G001200 Sobic001G001200 Sobic003G419800--Sobic001G001200 Sobic007G179600 Sobic007G179600 Sobic003G419800--Sobic007G179600 Sobic001G081300 Sobic001G081300 Sobic003G419800--Sobic001G081300 Sobic003G419800--Sobic003G051500 Sobic003G419800--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic003G419800--Sobic001G390900 Sobic003G014700 Sobic003G014700 Sobic003G419800--Sobic003G014700 Sobic007G182600 Sobic007G182600 Sobic003G419800--Sobic007G182600 Sobic009G116400--Sobic009G155400 Sobic009G116400--Sobic006G262700 Sobic009G116400--Sobic008G163400 Sobic009G116400--Sobic010G190900 Sobic007G087900 Sobic007G087900 Sobic009G116400--Sobic007G087900 Sobic009G116400--Sobic006G069100 Sobic009G116400--Sobic005G210700 Sobic004G346200 Sobic004G346200 Sobic009G116400--Sobic004G346200 Sobic009G116400--Sobic004G241000 Sobic001G391101--Sobic001G081300 Sobic001G391101--Sobic001G347100 Sobic001G391101--Sobic003G051500 Sobic001G391101--Sobic005G028300 Sobic001G391101--Sobic007G179600 Sobic001G391101--Sobic003G419800 Sobic001G391101--Sobic003G014700 Sobic001G391101--Sobic001G001200 Sobic001G391101--Sobic004G241000
Octagon: transcription factors


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