Gene annotation
Transcriptome id Sobic.007G077700.1
Synonym EMB1135, Sb07g006242
Functional annotation expressed protein
UniProt A0A1Z5R937
Pfam PF03004
Panther DB PTHR33411 PTHR33411:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G79350 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os04g52060.1 : transposable element protein, putative, containing Pfam profile: PF03004, Transposase_24, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS7B02G213600 , TraesCS7B02G213600 , TraesCS7D02G309600 , TraesCS7D02G309600 , TraesCS7D02G309600 , TraesCS7D02G309600 , TraesCS7A02G313200
Populus -


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cDNA sequences
Sobic.007G077700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -
2 Sobic.008G056900 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
3 Sobic.001G187800 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
4 Sobic.002G142600 NLI interacting factor-like phosphatase, putative, expressed -
5 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
6 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
7 Sobic.001G252500 expressed protein -
8 Sobic.004G149800 transcriptional derepression of gliadins and low-molecular-weight glutenins (LMWgs) by active demethylation of their promoters(PubMedID : 23184965)@hhH-GPD superfamily base excision DNA repair protein, expressed -
9 Sobic.009G235200 ribosomal RNA large subunit methyltransferase J, putative, expressed K14857: SPB1, AdoMet-dependent rRNA methyltransferase SPB1
10 Sobic.004G227100 survival motor neuron containing protein, expressed K13130: GEMIN2, gem associated protein 2
11 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
12 Sobic.003G184400 jmjC domain-containing protein 4, putative, expressed -
13 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
14 Sobic.001G009400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.005G009200 expressed protein -
16 Sobic.007G044100 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
17 Sobic.008G081600 expressed protein -
18 Sobic.009G116400 pentatricopeptide, putative, expressed -
19 Sobic.007G043900 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
20 Sobic.001G045700 "CESA3-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA2 - cellulose synthase, expressed K10999: cellulose synthase A


Gene co-expression network
sample Sobic007G077700 Sobic007G077700 Sobic009G096100 Sobic009G096100 Sobic007G077700--Sobic009G096100 Sobic008G056900 Sobic008G056900 Sobic007G077700--Sobic008G056900 Sobic001G187800 Sobic001G187800 Sobic007G077700--Sobic001G187800 Sobic002G142600 Sobic002G142600 Sobic007G077700--Sobic002G142600 Sobic005G011000 Sobic005G011000 Sobic007G077700--Sobic005G011000 Sobic002G380100 Sobic002G380100 Sobic007G077700--Sobic002G380100 Sobic001G252500 Sobic001G252500 Sobic007G077700--Sobic001G252500 Sobic004G149800 Sobic004G149800 Sobic007G077700--Sobic004G149800 Sobic009G235200 Sobic009G235200 Sobic007G077700--Sobic009G235200 Sobic009G096100--Sobic008G056900 Sobic002G192500 Sobic002G192500 Sobic009G096100--Sobic002G192500 Sobic010G157700 Sobic010G157700 Sobic009G096100--Sobic010G157700 Sobic001G485600 Sobic001G485600 Sobic009G096100--Sobic001G485600 Sobic006G056000 Sobic006G056000 Sobic009G096100--Sobic006G056000 Sobic007G043900 Sobic007G043900 Sobic009G096100--Sobic007G043900 Sobic002G344500 Sobic002G344500 Sobic009G096100--Sobic002G344500 Sobic009G096100--Sobic002G380100 Sobic009G096100--Sobic007G077700 Sobic008G056900--Sobic009G096100 Sobic008G056900--Sobic001G485600 Sobic008G081600 Sobic008G081600 Sobic008G056900--Sobic008G081600 Sobic007G000400 Sobic007G000400 Sobic008G056900--Sobic007G000400 Sobic008G056900--Sobic002G344500 Sobic007G197400 Sobic007G197400 Sobic008G056900--Sobic007G197400 Sobic004G227100 Sobic004G227100 Sobic008G056900--Sobic004G227100 Sobic008G056900--Sobic007G077700 Sobic001G087100 Sobic001G087100 Sobic008G056900--Sobic001G087100 Sobic001G009400 Sobic001G009400 Sobic001G187800--Sobic001G009400 Sobic009G155400 Sobic009G155400 Sobic001G187800--Sobic009G155400 Sobic001G448100 Sobic001G448100 Sobic001G187800--Sobic001G448100 Sobic006G111200 Sobic006G111200 Sobic001G187800--Sobic006G111200 Sobic004G217900 Sobic004G217900 Sobic001G187800--Sobic004G217900 Sobic006G262700 Sobic006G262700 Sobic001G187800--Sobic006G262700 Sobic009G108400 Sobic009G108400 Sobic001G187800--Sobic009G108400 Sobic001G347100 Sobic001G347100 Sobic001G187800--Sobic001G347100 Sobic001G187800--Sobic005G011000 Sobic006G226300 Sobic006G226300 Sobic002G142600--Sobic006G226300 Sobic002G142600--Sobic009G235200 Sobic005G199200 Sobic005G199200 Sobic002G142600--Sobic005G199200 Sobic001G334100 Sobic001G334100 Sobic002G142600--Sobic001G334100 Sobic003G184400 Sobic003G184400 Sobic002G142600--Sobic003G184400 Sobic009G074700 Sobic009G074700 Sobic002G142600--Sobic009G074700 Sobic006G131200 Sobic006G131200 Sobic002G142600--Sobic006G131200 Sobic006G185200 Sobic006G185200 Sobic002G142600--Sobic006G185200 Sobic010G007100 Sobic010G007100 Sobic002G142600--Sobic010G007100 Sobic006G271900 Sobic006G271900 Sobic005G011000--Sobic006G271900 Sobic009G116400 Sobic009G116400 Sobic005G011000--Sobic009G116400 Sobic004G036700 Sobic004G036700 Sobic005G011000--Sobic004G036700 Sobic005G011000--Sobic001G347100 Sobic005G210700 Sobic005G210700 Sobic005G011000--Sobic005G210700 Sobic005G011000--Sobic001G187800 Sobic003G419800 Sobic003G419800 Sobic005G011000--Sobic003G419800 Sobic002G389200 Sobic002G389200 Sobic005G011000--Sobic002G389200 Sobic005G028300 Sobic005G028300 Sobic005G011000--Sobic005G028300 Sobic002G079100 Sobic002G079100 Sobic002G380100--Sobic002G079100 Sobic004G119400 Sobic004G119400 Sobic002G380100--Sobic004G119400 Sobic008G017100 Sobic008G017100 Sobic002G380100--Sobic008G017100 Sobic002G380100--Sobic006G111200 Sobic002G380100--Sobic001G448100 Sobic003G185250 Sobic003G185250 Sobic002G380100--Sobic003G185250 Sobic003G070100 Sobic003G070100 Sobic002G380100--Sobic003G070100 Sobic010G050700 Sobic010G050700 Sobic002G380100--Sobic010G050700 Sobic002G380100--Sobic009G096100 Sobic002G151600 Sobic002G151600 Sobic001G252500--Sobic002G151600 Sobic003G442000 Sobic003G442000 Sobic001G252500--Sobic003G442000 Sobic001G045700 Sobic001G045700 Sobic001G252500--Sobic001G045700 Sobic002G106900 Sobic002G106900 Sobic001G252500--Sobic002G106900 Sobic005G009200 Sobic005G009200 Sobic001G252500--Sobic005G009200 Sobic004G077000 Sobic004G077000 Sobic001G252500--Sobic004G077000 Sobic006G123900 Sobic006G123900 Sobic001G252500--Sobic006G123900 Sobic008G165100 Sobic008G165100 Sobic001G252500--Sobic008G165100 Sobic007G224900 Sobic007G224900 Sobic001G252500--Sobic007G224900 Sobic004G149800--Sobic009G074700 Sobic006G028700 Sobic006G028700 Sobic004G149800--Sobic006G028700 Sobic001G088900 Sobic001G088900 Sobic004G149800--Sobic001G088900 Sobic009G213100 Sobic009G213100 Sobic004G149800--Sobic009G213100 Sobic009G000400 Sobic009G000400 Sobic004G149800--Sobic009G000400 Sobic004G149800--Sobic005G199200 Sobic004G149800--Sobic006G131200 Sobic004G128200 Sobic004G128200 Sobic004G149800--Sobic004G128200 Sobic010G278600 Sobic010G278600 Sobic004G149800--Sobic010G278600 Sobic008G163500 Sobic008G163500 Sobic009G235200--Sobic008G163500 Sobic009G235200--Sobic006G226300 Sobic009G235200--Sobic002G142600 Sobic003G042400 Sobic003G042400 Sobic009G235200--Sobic003G042400 Sobic007G014800 Sobic007G014800 Sobic009G235200--Sobic007G014800 Sobic002G399200 Sobic002G399200 Sobic009G235200--Sobic002G399200 Sobic001G173800 Sobic001G173800 Sobic009G235200--Sobic001G173800 Sobic009G235200--Sobic005G199200 Sobic002G263700 Sobic002G263700 Sobic009G235200--Sobic002G263700
Octagon: transcription factors


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