Gene annotation
Transcriptome id Sobic.006G111200.1
Synonym SMD1, RDR2, Sb06g019330
Functional annotation RNA-dependent RNA polymerase, putative, expressed
UniProt C5YA80
Pfam PF05183
Panther DB PTHR23079 PTHR23079:SF5
NCBI CDD -
KEGG Orthology K11699; RDR, RNA-dependent RNA polymerase
Gene Ontology GO:0003968; RNA-directed 5'-3' RNA polymerase activity


Orthologs (automatic annotation)
TAIR AT4G11130 : RNA-dependent RNA polymerase 2
RAP-DB (Rice) LOC_Os04g39160.1 : RNA-dependent RNA polymerase, putative, expressed
MaizeGDB (Corn) Zm00025a011081
Brachypodium KQJ83041 , KQJ83040 , PNT61248 , KQJ83036 , KQJ83037 , KQJ83038 , KQJ83039 , KQK17355
Barley HORVU2Hr1G081260.11 , HORVU2Hr1G081260.10 , HORVU2Hr1G081260.9 , HORVU2Hr1G081260.8 , HORVU2Hr1G081260.3 , HORVU2Hr1G081260.2 , HORVU2Hr1G081260.1 , HORVU2Hr1G081260.7 , HORVU2Hr1G081260.6 , HORVU2Hr1G081260.5 , HORVU2Hr1G081260.4
Wheat TraesCS4A02G119800 , TraesCS2D02G328100 , TraesCS4A02G119800 , TraesCS4B02G231900 , TraesCS2A02G333900 , TraesCS4D02G233200 , TraesCS4D02G186200 , TraesCS4D02G186200 , TraesCS2B02G347100 , TraesCS2B02G347100 , TraesCS2B02G347300 , TraesCS2A02G334100 , TraesCS2D02G328300 , TraesCS2D02G328300
Populus -


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cDNA sequences
Sobic.006G111200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G453500 expressed protein -
2 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
3 Sobic.001G368300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
4 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
5 Sobic.001G049800 DDT domain containing protein, putative, expressed -
6 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
7 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
8 Sobic.006G059500 expressed protein K13150: COIL, coilin
9 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
10 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
11 Sobic.004G027300 expressed protein -
12 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
13 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
14 Sobic.002G192500 ES43 protein, putative, expressed -
15 Sobic.001G187800 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
16 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
17 Sobic.009G148200 deoxynucleoside kinase family, putative, expressed -
18 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
19 Sobic.006G273900 expressed protein -
20 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -


Gene co-expression network
sample Sobic006G111200 Sobic006G111200 Sobic001G453500 Sobic001G453500 Sobic006G111200--Sobic001G453500 Sobic004G151000 Sobic004G151000 Sobic006G111200--Sobic004G151000 Sobic001G368300 Sobic001G368300 Sobic006G111200--Sobic001G368300 Sobic007G060600 Sobic007G060600 Sobic006G111200--Sobic007G060600 Sobic001G049800 Sobic001G049800 Sobic006G111200--Sobic001G049800 Sobic006G271900 Sobic006G271900 Sobic006G111200--Sobic006G271900 Sobic002G380100 Sobic002G380100 Sobic006G111200--Sobic002G380100 Sobic006G059500 Sobic006G059500 Sobic006G111200--Sobic006G059500 Sobic007G059700 Sobic007G059700 Sobic006G111200--Sobic007G059700 Sobic001G453500--Sobic006G111200 Sobic001G453500--Sobic001G368300 Sobic001G453500--Sobic004G151000 Sobic006G140400 Sobic006G140400 Sobic001G453500--Sobic006G140400 Sobic004G027400 Sobic004G027400 Sobic001G453500--Sobic004G027400 Sobic004G027300 Sobic004G027300 Sobic001G453500--Sobic004G027300 Sobic001G453500--Sobic001G049800 Sobic002G112600 Sobic002G112600 Sobic001G453500--Sobic002G112600 Sobic009G105400 Sobic009G105400 Sobic001G453500--Sobic009G105400 Sobic004G151000--Sobic001G049800 Sobic004G151000--Sobic004G027300 Sobic004G151000--Sobic006G111200 Sobic002G378100 Sobic002G378100 Sobic004G151000--Sobic002G378100 Sobic004G151000--Sobic007G060600 Sobic004G151000--Sobic002G112600 Sobic004G151000--Sobic001G453500 Sobic004G151000--Sobic006G059500 Sobic004G151000--Sobic007G059700 Sobic001G368300--Sobic006G111200 Sobic001G368300--Sobic001G453500 Sobic001G368300--Sobic007G060600 Sobic001G368300--Sobic004G027300 Sobic001G040600 Sobic001G040600 Sobic001G368300--Sobic001G040600 Sobic001G368300--Sobic007G059700 Sobic009G148200 Sobic009G148200 Sobic001G368300--Sobic009G148200 Sobic006G273900 Sobic006G273900 Sobic001G368300--Sobic006G273900 Sobic003G436600 Sobic003G436600 Sobic001G368300--Sobic003G436600 Sobic007G060600--Sobic001G049800 Sobic007G060600--Sobic001G040600 Sobic007G060600--Sobic007G059700 Sobic007G060600--Sobic004G151000 Sobic007G060600--Sobic004G027300 Sobic007G060600--Sobic006G273900 Sobic009G238700 Sobic009G238700 Sobic007G060600--Sobic009G238700 Sobic007G060600--Sobic006G111200 Sobic009G191500 Sobic009G191500 Sobic007G060600--Sobic009G191500 Sobic001G049800--Sobic007G060600 Sobic001G049800--Sobic004G151000 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic010G224700 Sobic010G224700 Sobic001G049800--Sobic010G224700 Sobic001G049800--Sobic006G111200 Sobic001G049800--Sobic006G059500 Sobic001G049800--Sobic002G378100 Sobic010G083900 Sobic010G083900 Sobic001G049800--Sobic010G083900 Sobic006G271900--Sobic001G040600 Sobic006G271900--Sobic007G060600 Sobic009G253200 Sobic009G253200 Sobic006G271900--Sobic009G253200 Sobic006G271900--Sobic001G049800 Sobic006G271900--Sobic006G111200 Sobic002G251800 Sobic002G251800 Sobic006G271900--Sobic002G251800 Sobic001G480400 Sobic001G480400 Sobic006G271900--Sobic001G480400 Sobic005G028300 Sobic005G028300 Sobic006G271900--Sobic005G028300 Sobic001G081300 Sobic001G081300 Sobic006G271900--Sobic001G081300 Sobic002G079100 Sobic002G079100 Sobic002G380100--Sobic002G079100 Sobic004G119400 Sobic004G119400 Sobic002G380100--Sobic004G119400 Sobic008G017100 Sobic008G017100 Sobic002G380100--Sobic008G017100 Sobic002G380100--Sobic006G111200 Sobic001G448100 Sobic001G448100 Sobic002G380100--Sobic001G448100 Sobic003G185250 Sobic003G185250 Sobic002G380100--Sobic003G185250 Sobic003G070100 Sobic003G070100 Sobic002G380100--Sobic003G070100 Sobic010G050700 Sobic010G050700 Sobic002G380100--Sobic010G050700 Sobic009G096100 Sobic009G096100 Sobic002G380100--Sobic009G096100 Sobic006G059500--Sobic004G151000 Sobic006G059500--Sobic001G049800 Sobic002G132600 Sobic002G132600 Sobic006G059500--Sobic002G132600 Sobic006G059500--Sobic006G111200 Sobic004G215900 Sobic004G215900 Sobic006G059500--Sobic004G215900 Sobic006G059500--Sobic007G060600 Sobic006G059500--Sobic006G140400 Sobic006G059500--Sobic001G453500 Sobic009G142000 Sobic009G142000 Sobic006G059500--Sobic009G142000 Sobic007G059700--Sobic006G273900 Sobic007G059700--Sobic007G060600 Sobic007G059700--Sobic004G151000 Sobic007G059700--Sobic001G049800 Sobic007G059700--Sobic004G027300 Sobic007G059700--Sobic009G191500 Sobic007G059700--Sobic001G453500 Sobic010G097500 Sobic010G097500 Sobic007G059700--Sobic010G097500 Sobic007G059700--Sobic006G111200
Octagon: transcription factors


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