Gene annotation
Transcriptome id Sobic.002G192500.1
Synonym Sb02g023940, EBS
Functional annotation ES43 protein, putative, expressed
UniProt C5XC21
Pfam PF00628 PF01426
Panther DB PTHR12505 PTHR12505:SF23
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0003682chromatin binding


Orthologs (automatic annotation)
TAIR AT4G22140 : PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
RAP-DB (Rice) LOC_Os09g21770.1 : ES43 protein, putative, expressed
MaizeGDB (Corn) Zm00025a013852 , Zm00025a006012 , Zm00025a046852
Brachypodium PNT68113 , KQJ90120
Barley HORVU5Hr1G059970.5 , HORVU5Hr1G059970.4 , HORVU5Hr1G059970.1 , HORVU5Hr1G059970.3 , HORVU5Hr1G059970.2 , HORVU5Hr1G059960.2 , HORVU5Hr1G059960.1
Wheat TraesCS5B02G200300 , TraesCS5A02G201700 , TraesCS5D02G208000
Populus -


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cDNA sequences
Sobic.002G192500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -
2 Sobic.006G056000 OsFBL16 - F-box domain and LRR containing protein, expressed -
3 Sobic.006G047100 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
4 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
5 Sobic.010G050700 protein kinase, putative, expressed -
6 Sobic.007G043900 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
7 Sobic.008G056900 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
8 Sobic.001G087100 far-red light perception and signal transduction(PubMedID : 14963106)@phytochrome C, putative, expressed -
9 Sobic.001G485600 DAG protein, chloroplast precursor, putative, expressed -
10 Sobic.009G055400 expressed protein -
11 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
12 Sobic.004G232000 TLD family protein, putative, expressed -
13 Sobic.001G368300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
14 Sobic.006G272200 cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
15 Sobic.009G112400 OsFBX361 - F-box domain containing protein, expressed -
16 Sobic.003G209400 expressed protein -
17 Sobic.002G076000 transporter-related, putative, expressed -
18 Sobic.001G061800 RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed K10756: replication factor C subunit 3/5
19 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
20 Sobic.003G245900 membrane associated DUF588 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G192500 Sobic002G192500 Sobic009G096100 Sobic009G096100 Sobic002G192500--Sobic009G096100 Sobic006G056000 Sobic006G056000 Sobic002G192500--Sobic006G056000 Sobic006G047100 Sobic006G047100 Sobic002G192500--Sobic006G047100 Sobic006G111200 Sobic006G111200 Sobic002G192500--Sobic006G111200 Sobic010G050700 Sobic010G050700 Sobic002G192500--Sobic010G050700 Sobic007G043900 Sobic007G043900 Sobic002G192500--Sobic007G043900 Sobic008G056900 Sobic008G056900 Sobic002G192500--Sobic008G056900 Sobic001G087100 Sobic001G087100 Sobic002G192500--Sobic001G087100 Sobic001G485600 Sobic001G485600 Sobic002G192500--Sobic001G485600 Sobic009G096100--Sobic008G056900 Sobic009G096100--Sobic002G192500 Sobic010G157700 Sobic010G157700 Sobic009G096100--Sobic010G157700 Sobic009G096100--Sobic001G485600 Sobic009G096100--Sobic006G056000 Sobic009G096100--Sobic007G043900 Sobic002G344500 Sobic002G344500 Sobic009G096100--Sobic002G344500 Sobic002G380100 Sobic002G380100 Sobic009G096100--Sobic002G380100 Sobic007G077700 Sobic007G077700 Sobic009G096100--Sobic007G077700 Sobic003G353600 Sobic003G353600 Sobic006G056000--Sobic003G353600 Sobic002G076000 Sobic002G076000 Sobic006G056000--Sobic002G076000 Sobic005G084100 Sobic005G084100 Sobic006G056000--Sobic005G084100 Sobic004G111000 Sobic004G111000 Sobic006G056000--Sobic004G111000 Sobic002G079100 Sobic002G079100 Sobic006G056000--Sobic002G079100 Sobic001G138400 Sobic001G138400 Sobic006G056000--Sobic001G138400 Sobic004G285000 Sobic004G285000 Sobic006G056000--Sobic004G285000 Sobic006G056000--Sobic006G047100 Sobic006G210000 Sobic006G210000 Sobic006G056000--Sobic006G210000 Sobic006G047100--Sobic005G084100 Sobic006G047100--Sobic006G056000 Sobic010G249300 Sobic010G249300 Sobic006G047100--Sobic010G249300 Sobic006G047100--Sobic002G192500 Sobic009G112400 Sobic009G112400 Sobic006G047100--Sobic009G112400 Sobic004G232000 Sobic004G232000 Sobic006G047100--Sobic004G232000 Sobic002G131300 Sobic002G131300 Sobic006G047100--Sobic002G131300 Sobic006G047100--Sobic002G076000 Sobic001G057200 Sobic001G057200 Sobic006G047100--Sobic001G057200 Sobic001G453500 Sobic001G453500 Sobic006G111200--Sobic001G453500 Sobic004G151000 Sobic004G151000 Sobic006G111200--Sobic004G151000 Sobic001G368300 Sobic001G368300 Sobic006G111200--Sobic001G368300 Sobic007G060600 Sobic007G060600 Sobic006G111200--Sobic007G060600 Sobic001G049800 Sobic001G049800 Sobic006G111200--Sobic001G049800 Sobic006G271900 Sobic006G271900 Sobic006G111200--Sobic006G271900 Sobic006G111200--Sobic002G380100 Sobic006G059500 Sobic006G059500 Sobic006G111200--Sobic006G059500 Sobic007G059700 Sobic007G059700 Sobic006G111200--Sobic007G059700 Sobic010G050700--Sobic006G056000 Sobic009G148200 Sobic009G148200 Sobic010G050700--Sobic009G148200 Sobic010G050700--Sobic002G380100 Sobic006G067700 Sobic006G067700 Sobic010G050700--Sobic006G067700 Sobic001G367100 Sobic001G367100 Sobic010G050700--Sobic001G367100 Sobic002G010800 Sobic002G010800 Sobic010G050700--Sobic002G010800 Sobic010G050700--Sobic002G192500 Sobic004G227500 Sobic004G227500 Sobic010G050700--Sobic004G227500 Sobic002G334600 Sobic002G334600 Sobic010G050700--Sobic002G334600 Sobic007G043900--Sobic004G232000 Sobic004G096500 Sobic004G096500 Sobic007G043900--Sobic004G096500 Sobic007G043900--Sobic006G056000 Sobic006G052300 Sobic006G052300 Sobic007G043900--Sobic006G052300 Sobic009G100050 Sobic009G100050 Sobic007G043900--Sobic009G100050 Sobic007G043900--Sobic002G010800 Sobic007G043900--Sobic009G096100 Sobic007G043900--Sobic001G087100 Sobic004G087600 Sobic004G087600 Sobic007G043900--Sobic004G087600 Sobic008G056900--Sobic009G096100 Sobic008G056900--Sobic001G485600 Sobic008G081600 Sobic008G081600 Sobic008G056900--Sobic008G081600 Sobic007G000400 Sobic007G000400 Sobic008G056900--Sobic007G000400 Sobic008G056900--Sobic002G344500 Sobic007G197400 Sobic007G197400 Sobic008G056900--Sobic007G197400 Sobic004G227100 Sobic004G227100 Sobic008G056900--Sobic004G227100 Sobic008G056900--Sobic007G077700 Sobic008G056900--Sobic001G087100 Sobic001G043400 Sobic001G043400 Sobic001G087100--Sobic001G043400 Sobic001G087100--Sobic004G232000 Sobic005G015100 Sobic005G015100 Sobic001G087100--Sobic005G015100 Sobic003G174800 Sobic003G174800 Sobic001G087100--Sobic003G174800 Sobic009G015800 Sobic009G015800 Sobic001G087100--Sobic009G015800 Sobic001G087100--Sobic002G076000 Sobic001G087100--Sobic007G043900 Sobic009G225200 Sobic009G225200 Sobic001G087100--Sobic009G225200 Sobic010G166000 Sobic010G166000 Sobic001G087100--Sobic010G166000 Sobic001G485600--Sobic008G056900 Sobic001G485600--Sobic009G096100 Sobic003G324100 Sobic003G324100 Sobic001G485600--Sobic003G324100 Sobic003G245900 Sobic003G245900 Sobic001G485600--Sobic003G245900 Sobic001G362300 Sobic001G362300 Sobic001G485600--Sobic001G362300 Sobic001G485600--Sobic008G081600 Sobic005G100900 Sobic005G100900 Sobic001G485600--Sobic005G100900 Sobic001G485600--Sobic003G174800 Sobic001G485600--Sobic007G197400
Octagon: transcription factors


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