Gene annotation
Transcriptome id Sobic.004G036700.1
Synonym Sb04g003160, SKB1, ATPRMT5, PRMT5
Functional annotation arginine N-methyltransferase 5, putative, expressed
UniProt C5XUJ2
Pfam PF05185
Panther DB PTHR10738
NCBI CDD -
KEGG Orthology K02516; PRMT5, type II protein arginine methyltransferase
Gene Ontology GO:0008168; methyltransferase activity GO:0006479protein methylation


Orthologs (automatic annotation)
TAIR AT4G31120 : SHK1 binding protein 1
RAP-DB (Rice) LOC_Os02g04660.1 : arginine N-methyltransferase 5, putative, expressed
MaizeGDB (Corn) Zm00025a035021 , Zm00025a018941
Brachypodium KQJ93268 , KQJ93267
Barley HORVU6Hr1G019540.11 , HORVU6Hr1G019540.10 , HORVU6Hr1G019540.3 , HORVU6Hr1G019540.9 , HORVU6Hr1G019540.8 , HORVU6Hr1G019540.7 , HORVU6Hr1G019540.6 , HORVU6Hr1G019540.5 , HORVU6Hr1G019540.4 , HORVU6Hr1G019540.2 , HORVU6Hr1G019540.1
Wheat TraesCS6A02G109100 , TraesCS6A02G109100 , TraesCS6B02G137700 , TraesCS6B02G137700 , TraesCS6B02G137700 , TraesCS6B02G137700 , TraesCS6D02G097500 , TraesCS6D02G097500 , TraesCS6D02G097500
Populus -


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cDNA sequences
Sobic.004G036700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
2 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
3 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
4 Sobic.006G225400 zinc finger protein, putative, expressed -
5 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
6 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
7 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
8 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
9 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
10 Sobic.003G184400 jmjC domain-containing protein 4, putative, expressed -
11 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
12 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
13 Sobic.001G049800 DDT domain containing protein, putative, expressed -
14 Sobic.001G544300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed -
15 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
16 Sobic.002G344500 pentatricopeptide, putative, expressed K18213: proteinaceous RNase P
17 Sobic.007G185600 methyltransferase domain containing protein, expressed K15190: MEPCE, 7SK snRNA methylphosphate capping enzyme
18 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
19 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
20 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1


Gene co-expression network
sample Sobic004G036700 Sobic004G036700 Sobic005G028100 Sobic005G028100 Sobic004G036700--Sobic005G028100 Sobic001G401400 Sobic001G401400 Sobic004G036700--Sobic001G401400 Sobic001G422500 Sobic001G422500 Sobic004G036700--Sobic001G422500 Sobic006G225400 Sobic006G225400 Sobic004G036700--Sobic006G225400 Sobic008G163500 Sobic008G163500 Sobic004G036700--Sobic008G163500 Sobic003G123200 Sobic003G123200 Sobic004G036700--Sobic003G123200 Sobic003G425100 Sobic003G425100 Sobic004G036700--Sobic003G425100 Sobic006G198600 Sobic006G198600 Sobic004G036700--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic004G036700--Sobic010G205900 Sobic005G028100--Sobic004G036700 Sobic005G028100--Sobic008G163500 Sobic005G028100--Sobic006G225400 Sobic005G028100--Sobic010G205900 Sobic005G028100--Sobic003G123200 Sobic003G432300 Sobic003G432300 Sobic005G028100--Sobic003G432300 Sobic002G126800 Sobic002G126800 Sobic005G028100--Sobic002G126800 Sobic001G373000 Sobic001G373000 Sobic005G028100--Sobic001G373000 Sobic002G132600 Sobic002G132600 Sobic005G028100--Sobic002G132600 Sobic001G401400--Sobic004G036700 Sobic001G401400--Sobic006G198600 Sobic001G401400--Sobic005G028100 Sobic003G322200 Sobic003G322200 Sobic001G401400--Sobic003G322200 Sobic003G407800 Sobic003G407800 Sobic001G401400--Sobic003G407800 Sobic001G372800 Sobic001G372800 Sobic001G401400--Sobic001G372800 Sobic001G401400--Sobic006G225400 Sobic001G401400--Sobic001G422500 Sobic003G407600 Sobic003G407600 Sobic001G401400--Sobic003G407600 Sobic001G422500--Sobic004G036700 Sobic001G422500--Sobic008G163500 Sobic002G378100 Sobic002G378100 Sobic001G422500--Sobic002G378100 Sobic006G231800 Sobic006G231800 Sobic001G422500--Sobic006G231800 Sobic010G083900 Sobic010G083900 Sobic001G422500--Sobic010G083900 Sobic002G262100 Sobic002G262100 Sobic001G422500--Sobic002G262100 Sobic009G101200 Sobic009G101200 Sobic001G422500--Sobic009G101200 Sobic001G422500--Sobic006G198600 Sobic001G422500--Sobic003G123200 Sobic006G225400--Sobic005G028100 Sobic006G251600 Sobic006G251600 Sobic006G225400--Sobic006G251600 Sobic006G225400--Sobic004G036700 Sobic006G225400--Sobic003G425100 Sobic009G071700 Sobic009G071700 Sobic006G225400--Sobic009G071700 Sobic006G225400--Sobic010G205900 Sobic006G225400--Sobic003G123200 Sobic006G225400--Sobic001G401400 Sobic006G225400--Sobic006G198600 Sobic008G163500--Sobic005G028100 Sobic008G163500--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic008G163500--Sobic009G246500 Sobic008G163500--Sobic010G205900 Sobic008G049100 Sobic008G049100 Sobic008G163500--Sobic008G049100 Sobic005G098800 Sobic005G098800 Sobic008G163500--Sobic005G098800 Sobic008G163500--Sobic001G422500 Sobic010G224700 Sobic010G224700 Sobic008G163500--Sobic010G224700 Sobic008G163500--Sobic004G036700 Sobic003G123200--Sobic005G098800 Sobic003G123200--Sobic008G163500 Sobic003G123200--Sobic010G205900 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic003G123200--Sobic005G028100 Sobic002G423400 Sobic002G423400 Sobic003G123200--Sobic002G423400 Sobic003G123200--Sobic006G198600 Sobic003G123200--Sobic010G224700 Sobic009G163600 Sobic009G163600 Sobic003G425100--Sobic009G163600 Sobic003G425100--Sobic005G028100 Sobic004G027300 Sobic004G027300 Sobic003G425100--Sobic004G027300 Sobic003G425100--Sobic006G225400 Sobic003G425100--Sobic010G224700 Sobic003G425100--Sobic009G071700 Sobic003G436600 Sobic003G436600 Sobic003G425100--Sobic003G436600 Sobic003G425100--Sobic006G198600 Sobic003G425100--Sobic004G036700 Sobic006G198600--Sobic003G123200 Sobic006G198600--Sobic009G071700 Sobic006G198600--Sobic001G401400 Sobic006G198600--Sobic008G163500 Sobic006G198600--Sobic006G251600 Sobic006G198600--Sobic008G049100 Sobic006G198600--Sobic003G425100 Sobic006G198600--Sobic004G036700 Sobic001G157300 Sobic001G157300 Sobic006G198600--Sobic001G157300 Sobic010G205900--Sobic008G049100 Sobic010G205900--Sobic003G123200 Sobic010G205900--Sobic009G246500 Sobic010G205900--Sobic005G028100 Sobic002G071400 Sobic002G071400 Sobic010G205900--Sobic002G071400 Sobic010G205900--Sobic005G098800 Sobic010G205900--Sobic008G163500 Sobic003G199300 Sobic003G199300 Sobic010G205900--Sobic003G199300 Sobic001G024000 Sobic001G024000 Sobic010G205900--Sobic001G024000
Octagon: transcription factors


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